Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_F11
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 30 0.33
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 2.3
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 5.4
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 9.5
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 9.5
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 9.5
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 9.5
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 29.9 bits (64), Expect = 0.33
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Frame = +3
Query: 129 TDTQTNLQFQKH--IEIPNDIEIFILLEGKYLAHSIKQNVCNLELINSVPEISLKIYKMH 302
+D Q L+ QK E P+ ++ ++E L I+ V N EI++ K
Sbjct: 710 SDIQQQLRLQKRSITEYPSQLDPLFMVE---LPTPIRNEV------NDNHEIAMN--KRL 758
Query: 303 SLESYVXXXXXXXXXXXXXXXHLLEKYITNSKKVISMITKPLVEYATSEVCHEECVIRRL 482
SL+S+ + +K + SKK I KP V+Y T + ++ + L
Sbjct: 759 SLKSHADNKIDERGKKKIRQENAFDKLLQISKKS-KTINKPNVDYLTLKELPKDLQKQIL 817
Query: 483 STKNCKNSSLSKYPCLEQPNIIS 551
N + S L LE+P+I++
Sbjct: 818 KESNLQKSDLISEVKLEKPHIVT 840
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -1
Query: 372 VNELFHYYKLCHNRK*CIHNFRGSAFYK-SLG*FQVLSL*VPDCIHSVLLNGLNTFLPVK 196
V+E KL N+K C+ ++ GS F++ S F+VL L + C L++ LNT L V+
Sbjct: 78 VHEEVRTMKLVSNQKRCV-SYYGSEFFRTSKNQFEVLVL-LEYCPCGGLIDFLNTRLQVR 135
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 67 EKLLNHQAELLGKIGMKITVLQIRKPIYNFKNTL 168
+++L + EL GK+ ++ T++ + Y FKN L
Sbjct: 662 DEVLKYFNELSGKLALEPTLICAEQCFYQFKNKL 695
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 153 FQKHIEIPNDIEIFILLEGKYLAHSIKQNVCNL 251
++ HI P IE F+L G L H + N+ L
Sbjct: 88 YKTHIGHPKFIEPFVLFYGDRLVHDARYNLHEL 120
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 24 KRRGLVIVGKMNNFGEIIEPSSRTT 98
K +G+V GK NN +PSS+ T
Sbjct: 47 KLKGVVAGGKENNIASFQKPSSKAT 71
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 271 GTEFMSSRLHTFCFIEWAKYFPSSK 197
G+ F S +H CF+ KY+ S +
Sbjct: 227 GSRFGSQLMHLSCFLNLRKYYKSDQ 251
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 99 WEDWDENNSSTDTQTNLQF 155
W D+DEN SS + TNL++
Sbjct: 134 WYDYDENASSEVSITNLEW 152
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 75 IEPSSR-TTWEDWDENNSSTDTQT 143
+ PS + T +DWD SST+T T
Sbjct: 92 LRPSKKKATLDDWDIPTSSTETDT 115
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 ENNSSTDTQTNLQFQKHIEIPNDIEI-FILLEGKYLAHSIKQNVCNLELINSVPEISLKI 290
EN S+ + K IE ++++ + +GK L H++ ++V N + + I+L
Sbjct: 808 ENASAVSPDHPVVITKFIEGARELDVDAVASKGKLLVHAVSEHVENAGVHSGDATIALPP 867
Query: 291 YKM 299
Y +
Sbjct: 868 YSL 870
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,318
Number of Sequences: 5004
Number of extensions: 57950
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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