Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_F09
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 51 1e-07
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 29 0.46
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 28 1.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 1.4
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 26 3.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.3
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 26 4.3
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 4.3
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 5.7
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.5
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 9.9
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 25 9.9
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 25 9.9
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 25 9.9
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 50.8 bits (116), Expect = 1e-07
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 350 REFMFEKCHYRHVLLRVSYLGWEYQXLAVQENTTQ--TVEYHLFEXLXRACLIQSRETSN 523
R F EK + V + +Y GW Y LA Q T TVE +FE L RA LI + +
Sbjct: 84 RPFQLEKTVF--VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCS 141
Query: 524 HHRCGRTDQG 553
RCGRTD+G
Sbjct: 142 FSRCGRTDKG 151
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 29.1 bits (62), Expect = 0.46
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 IIQLQAHNTQLKNIINKTTPCRWPKAEKSRPKR 354
++ +Q QL NI+ + P WP A RP+R
Sbjct: 226 LLPIQQCEFQLTNILEQLQPDSWPVANDRRPQR 258
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 496 TGPXQGFKKMIFYCLCCILLY 434
TG Q + + FYCLCCIL Y
Sbjct: 476 TGSPQSLE-VSFYCLCCILEY 495
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 216 LSCCVPVNLLFWWQF-FHILTSLIL 145
L C VPV L WW F FH L + I+
Sbjct: 542 LMCLVPVEPLRWWVFRFHSLNAGII 566
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 PKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKT 309
P + N T+E+LL +N L+E++ +LQA N + + + T
Sbjct: 614 PNCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 526 MIRGFSALYQTGPXQGFKKMIFYCLCCILLYSQTLVFPAKVRYP 395
MI GF A+Y+ P M + C++ Q + A V YP
Sbjct: 149 MILGFEAIYRFAPDIFIDTMGYAFTFCVVKSFQNIPVGAYVHYP 192
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 305 LFMMFFSCVLWACN----CIIFSTRSFLSNFKSSSLVAFRLIFCF 183
+ FF C ++ N C++FS ++ S K + +L++CF
Sbjct: 38 ILSFFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCF 82
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 33 ICSSLLHN*NTYVNLSVHINYAWDIGLY*TIRHVPETVILNSLRYGKTATKT 188
+C+S+L+N + Y+N NY +GL + H P + L+ KT
Sbjct: 214 LCASILNNSSQYIN-DACFNYGKFLGLSLQLAHKPVSPDAQVLQKNNDILKT 264
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 4.3
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = -3
Query: 350 FGLLFSAFGHRQGVVLFMMFFSCVLWACNCIIFSTRSFLSNFKSSSLVAFRL-IFCFGGS 174
FG SA R + L M SCV+ + I + + + + S SL+++ +F G
Sbjct: 389 FGFAISASDRRSFLNLIM---SCVMVS----IQQSSAEVGHSTSDSLISWASRLFTKGFW 441
Query: 173 FSIS*RV*YYCFRYMSYSLIQPYIPGIVNMYT*IHIC 63
++IS V CF S + ++ +V+ + H+C
Sbjct: 442 YAISFGVFSNCFSLQLQSFFEKHLGNVVDKFFLEHLC 478
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 180 WQFFHILTSLILLFQVHVV*FNTTLYPRHS*YVHLNSHMYFNYEEE 43
+Q ++++ + QVH + FNT LY R+ L S+ ++ E +
Sbjct: 267 YQLAQPISTVDMYAQVHYIRFNTLLYYRYQLQEILLSYNHYPQESD 312
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 84 VHLNSHMYFNYEEEKNRSLKPGNVGI 7
V++ SHM Y + N K G+VGI
Sbjct: 85 VNIESHMLSKYRKYLNEGGKQGDVGI 110
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 277 NTQLKNIINKTTPCRWPKAEKSRPKRIYV*KMPLSSCPP 393
N + N+ + T PKA K P I+ PLS PP
Sbjct: 403 NPTVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPP 441
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 96 HS*YVHLNSHMYFNYEEEKNRSLKPGNVGI 7
H Y + + + N ++ K+ SLKPG +GI
Sbjct: 45 HQIYNKFSKYRFAN-DQGKDTSLKPGEIGI 73
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 547 VCTTTSVMIRGFSALYQTGPXQGFKKMIFYCLCCILLYSQTLVF 416
+ T S ++R + A + T P F Y L C S+ L+F
Sbjct: 58 IWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFLSEWLLF 101
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 293 FFSCVLWACNCIIFSTRSFLSNFKSSSLVAFRLIFCF 183
F+ VLW C C ++ T + + +A I CF
Sbjct: 277 FYGYVLWLCWCTMYLTHHYFVDLVGGMCLA---IICF 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,793
Number of Sequences: 5004
Number of extensions: 50703
Number of successful extensions: 111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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