Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_F07
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   158   4e-40
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.1  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   2.8  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  158 bits (384), Expect = 4e-40
 Identities = 81/153 (52%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
 Frame = +2

Query: 50  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELXITKAKEXELHN-KKSIIIYVP 223
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 224 MPKLKAFXKIQIRLVRELEKKFSGKHVXFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 403
            P LKAF K Q RL RELEKKF+ +HV F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 404 YDAILEDLVFPAEIVGKRIRVKLDGSQLIXVHL 502
           ++AILED+VFP EI+GKR R   DG + I V L
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFL 156


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 342 LGLGRILRSPTKXTCLPLNFFSSSRTS 262
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 315  ETVRSCLSPATKPVLLTNKRGHAQ 386
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 370 KEATLKDIDLCVRCYPRGLGLPC 438
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 332 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 457
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 20  PPVKLSTMSTKIIKASGAEADSFETS 97
           PPV+ S  ST II       DSF +S
Sbjct: 23  PPVETSISSTNIIDLDAIPDDSFPSS 48


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 189  SSISLAFVMXSSRSWALRSELVSSSTSACEIEVSKESASAPLAL 58
            SSI+ A V  SS S    + +  SSTS+     + +S+++ +A+
Sbjct: 1002 SSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAV 1045


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,483
Number of Sequences: 5004
Number of extensions: 31829
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)