Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_F03
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0054 - 16038103-16038251,16038256-16038619                       29   2.4  
11_01_0474 - 3666236-3668050                                           27   9.7  

>06_03_0054 - 16038103-16038251,16038256-16038619
          Length = 170

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 164 KQLLKEAVAIPSVSCDVKYRADCIRMV-HWMQDKLKEVGATTELRDVGFQTID 319
           K +L     +P+    VK   +C   + HW+Q+K K+ G  T    +G Q  D
Sbjct: 11  KDILDNKRPLPTTKV-VKLTEECSNAILHWLQEKKKDPGCPTITCSIGRQHFD 62


>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 47  FPAYHQHYSVSSKQVSAKM-ATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYR 223
           F  Y   Y V  K     +  T KTLP +F Y +Q+    + +  E       SC     
Sbjct: 411 FLVYDHDYCVKEKFWKIMLDTTNKTLPSVFAYKNQSSPCLRCIPSEISGYLLTSCS---- 466

Query: 224 ADCIRMVHWMQDKLKEVGATT 286
           +D  +    + D L    ATT
Sbjct: 467 SDSTKPAAIVVDVLPAAAATT 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,828
Number of Sequences: 37544
Number of extensions: 353863
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)