Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_E24
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 31 0.88
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 30 1.2
01_02_0073 + 10834718-10834999,10835076-10835141,10835386-108354... 29 3.5
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 6.2
05_06_0290 - 26961926-26962423 28 6.2
02_03_0317 - 17659356-17659634,17660028-17660552,17660587-176606... 28 6.2
08_02_0480 + 17632176-17632814,17633838-17633906 27 8.2
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 27 8.2
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 30.7 bits (66), Expect = 0.88
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 199 ESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPP 369
E++A A ARR SS+ S PP RKPP + ++R L P N P
Sbjct: 10 EAEADLQALARRFSFSSSSSPS-PSPSPPSSSRKPPLPPRRSPQKRPGLPTIPENGP 65
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 283 PRRHRKPPTL*KTRSRRRASLLVEPRNPP 369
PRRHR P + R RR A+ + P PP
Sbjct: 13 PRRHRHGPATPRRRRRRHAAAVATPPPPP 41
>01_02_0073 +
10834718-10834999,10835076-10835141,10835386-10835472,
10835699-10835760,10836142-10836151,10836162-10836170
Length = 171
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -2
Query: 417 RRLRSAWHRQLS*QHRWRISRLHQ*ARPPS*PGLLQRGRLPV 292
RR R AW + S RWR + L + ARP GL + RL V
Sbjct: 51 RRWRPAWRERRS---RWREAGLAREARPVEETGLAREARLVV 89
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 253 GRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPPTMLLAQLP 393
G S+LP RR R+PP RRR +P +PP LP
Sbjct: 10 GTSSSSSSLPSRRRRRPP---PRLGRRRGGDDQQPPHPPKASSEALP 53
>05_06_0290 - 26961926-26962423
Length = 165
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 178 KTQKCSAESQAHFVASARRLHLSSTGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEP 357
+T K S E++ + RR + + + PR H + P L RRRA + P
Sbjct: 18 ETHKKSPEAEMENLVHGRRWRNHEQLPQEITARNAPREHTQSPHLSLPGPRRRARTSIPP 77
Query: 358 RNP 366
+P
Sbjct: 78 TDP 80
>02_03_0317 -
17659356-17659634,17660028-17660552,17660587-17660661,
17661699-17662496
Length = 558
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 172 INKTQKCSAESQAHFVASARRLHLSSTGRRRMQSNL 279
I K K +A S A A++RRLHL R+ S+L
Sbjct: 51 IRKQAKDAAASAAALAAASRRLHLDRARHLRLLSSL 86
>08_02_0480 + 17632176-17632814,17633838-17633906
Length = 235
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 242 SLRQEEEGCRATCRREGTGSRPRCRRPGQEGG 337
SLR +G + C G G+RP RRP + GG
Sbjct: 69 SLRLTAQG-QGDCPALGGGNRPNPRRPARPGG 99
>06_03_0921 +
25949453-25949986,25950150-25950188,25950380-25950445,
25950526-25950669,25951416-25951612,25952281-25952443,
25952760-25952873,25953304-25953401,25953964-25954042,
25954356-25954514,25954690-25954779,25955790-25955923,
25956513-25956672,25956826-25956909,25957000-25957167,
25957321-25957446,25958088-25958225,25958311-25958414,
25958832-25958895,25959229-25959317,25959393-25959534,
25959937-25960000,25960085-25960152,25960399-25960521,
25960604-25960669,25960857-25960962,25961076-25961167,
25961243-25961344
Length = 1170
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 510 QGPSSHQXRLCWRRPQPLLLQATPS 436
+G H CWR PL+ +A PS
Sbjct: 427 KGSIEHSYPFCWRSGTPLIYRAVPS 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,950
Number of Sequences: 37544
Number of extensions: 270642
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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