Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E24
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    38   0.007
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    27   9.6  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    27   9.6  

>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +1

Query: 136 YSVILINVLCFFINKTQKCSAESQAHFVASARRLHLSSTGRRRMQSN 276
           YSV L N  CF I KT+K + ++  + + SA   + ++TG+ +++S+
Sbjct: 594 YSVTLDNTTCFPILKTRKATLKNAVNLIKSAEEKYQAATGKMKLESH 640


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 283 PRRHRKPPTL*KTRSRRRASLLVEPRN 363
           P R RKP TL +T+S++R S    P N
Sbjct: 206 PSRKRKPETLIETKSKKRKSARGRPSN 232


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 510 QGPSSHQXRLCWRRPQPLLLQATPS 436
           Q    H    CWR   PLL +A PS
Sbjct: 391 QAEVKHSYPFCWRSDTPLLYKAVPS 415


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical protein
            C25A1.7 protein.
          Length = 970

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = -3

Query: 251  VEERCSLLADATKCACDSAEHFCVLFIK-KHNTFIKITE*FSPALLNFSIL*QYRYRTAD 75
            V E  +LL        D+++   VL +  +++T ++I E   P LLN S +  +  R  D
Sbjct: 873  VYEVRNLLESTAGPKIDTSKKGIVLQVTPEYHTILRIYESELPELLNVSQVILHENR--D 930

Query: 74   DTAVEMRRSKYLQGSTDCRRNQRN 3
            + +VE+  S+ L+    CR++ RN
Sbjct: 931  ENSVELVESR-LRYCERCRKHTRN 953


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 247 STGRRRMQSNLPPRRHRKPPTL*KTRSRRRASLLVEPRNPP 369
           S  RRR  S  PPRR R+  +   +R RRRAS    PR  P
Sbjct: 90  SPPRRRRPSPSPPRRDRRDRS--GSRQRRRAS----PRRSP 124


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
            synthetase (mitochondrial)protein.
          Length = 972

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = -3

Query: 251  VEERCSLLADATKCACDSAEHFCVLFIK-KHNTFIKITE*FSPALLNFSIL*QYRYRTAD 75
            V E  +LL        D+++   VL +  +++T ++I E   P LLN S +  +  R  D
Sbjct: 873  VYEVRNLLESTAGPKIDTSKKGIVLQVTPEYHTILRIYESELPELLNVSQVILHENR--D 930

Query: 74   DTAVEMRRSKYLQGSTDCRRNQRN 3
            + +VE+  S+ L+    CR++ RN
Sbjct: 931  ENSVELVESR-LRYCERCRKHTRN 953


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,555
Number of Sequences: 27780
Number of extensions: 207794
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)