Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E24
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    24   0.94 
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   0.94 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.7  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 521 RYIVDPPPTIPXGCR-VRNK 577
           RYI+D PP  P G + ++N+
Sbjct: 52  RYIIDVPPRCPPGSKFIKNR 71


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 521 RYIVDPPPTIPXGCR-VRNK 577
           RYI+D PP  P G + ++N+
Sbjct: 52  RYIIDVPPRCPPGSKFIKNR 71


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 245 LRQEEEGCRATCRREGTGSRPRCRRPGQEGGRAYWWSR 358
           L Q +   +   RRE + S       G+EGG    WSR
Sbjct: 355 LGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSR 392


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 513 CQGPSSHQXRLCWRRPQPLLLQ 448
           CQ       ++ WR+P+P +++
Sbjct: 25  CQPTQRTMSKIQWRKPKPAMVE 46


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 33  TLEVFRSPHFNRSVVGSP 86
           T+E+    H + SVVGSP
Sbjct: 274 TMELHIKTHSDSSVVGSP 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,763
Number of Sequences: 438
Number of extensions: 2333
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)