Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E22
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...   141   3e-35
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    97   8e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    96   2e-21
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    95   3e-21
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    93   2e-20
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    91   7e-20
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    69   3e-13
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    68   5e-13
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    37   9e-04
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   1.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   1.2  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   2.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   5.0  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   5.0  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    24   8.8  

>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score =  141 bits (342), Expect = 3e-35
 Identities = 70/95 (73%), Positives = 79/95 (83%)
 Frame = +3

Query: 87  LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKM 266
           L ++G +  G+ VR QNV+      N+VKSSLGPVGLDKMLVDDIGDVTVTNDGATIL +
Sbjct: 10  LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSL 69

Query: 267 LEVEHPAAKVLVELAQLQDEEVGDGTXSVVIIAAE 371
           L+VEHPA KVLVELAQ QD+EVGDGT SVVIIAAE
Sbjct: 70  LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAE 104


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 97.1 bits (231), Expect = 8e-22
 Identities = 41/79 (51%), Positives = 61/79 (77%)
 Frame = +3

Query: 135 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ 314
           N+       + ++++LGP+G DK++VDD G+V ++NDGATI+K+L++ HPAAK LV++A+
Sbjct: 29  NINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIAR 88

Query: 315 LQDEEVGDGTXSVVIIAAE 371
            QD EVGDGT SVV+ A E
Sbjct: 89  AQDAEVGDGTTSVVVFAGE 107


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 95.9 bits (228), Expect = 2e-21
 Identities = 43/95 (45%), Positives = 63/95 (66%)
 Frame = +3

Query: 87  LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKM 266
           ++  G R  G   +  N+       +++++ LGP  + KML+D +G V +TNDG  IL+ 
Sbjct: 8   MNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILRE 67

Query: 267 LEVEHPAAKVLVELAQLQDEEVGDGTXSVVIIAAE 371
           +EV HPAAK ++ELA+ QDEEVGDGT SV+I+A E
Sbjct: 68  IEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGE 102


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 95.1 bits (226), Expect = 3e-21
 Identities = 44/83 (53%), Positives = 64/83 (77%)
 Frame = +3

Query: 117 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 296
           D V++ +++      NIV++SLGP GLDK+L+   G++TVTNDGATIL  +EVEH  AK+
Sbjct: 34  DAVKS-HILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKL 92

Query: 297 LVELAQLQDEEVGDGTXSVVIIA 365
           LV+L++ QD+E+GDGT  VV++A
Sbjct: 93  LVQLSKSQDDEIGDGTTGVVVLA 115


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 92.7 bits (220), Expect = 2e-20
 Identities = 45/81 (55%), Positives = 58/81 (71%)
 Frame = +3

Query: 123 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLV 302
           VR  N+M      + +++SLGP G+DKM+    G+V +TNDGATILK L V HPAAK+LV
Sbjct: 20  VRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLV 79

Query: 303 ELAQLQDEEVGDGTXSVVIIA 365
           +L+  QD E GDGT SVVI+A
Sbjct: 80  DLSAAQDVEAGDGTTSVVILA 100


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 90.6 bits (215), Expect = 7e-20
 Identities = 44/93 (47%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
 Frame = +3

Query: 96  AGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDI-GDVTVTNDGATILKMLE 272
           +G +  G+  R  + +      ++VKS+LGP G+DK+L  +  GD+ VTNDGATILK + 
Sbjct: 12  SGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIA 71

Query: 273 VEHPAAKVLVELAQLQDEEVGDGTXSVVIIAAE 371
           +++ AAKVLV ++++QD+EVGDGT SV + AAE
Sbjct: 72  LDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAE 104


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 68.5 bits (160), Expect = 3e-13
 Identities = 29/79 (36%), Positives = 47/79 (59%)
 Frame = +3

Query: 135 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ 314
           N+       +++KS+LGP G  KMLVD  G + +T DG  +L  +++++P A  + + A 
Sbjct: 21  NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80

Query: 315 LQDEEVGDGTXSVVIIAAE 371
            QD+  GDGT SV ++  E
Sbjct: 81  AQDDATGDGTTSVCLLVGE 99


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 67.7 bits (158), Expect = 5e-13
 Identities = 31/69 (44%), Positives = 47/69 (68%)
 Frame = +3

Query: 165 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDGT 344
           I ++SLGP G +K++V+ +    +TND ATI++ LEV HPAAK++V+  Q Q+ E+GD  
Sbjct: 41  ITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAA 100

Query: 345 XSVVIIAAE 371
             VV+   E
Sbjct: 101 NFVVVFTGE 109


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 37.1 bits (82), Expect = 9e-04
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 168 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVG 335
           V  +LGP G + ++    G   +T DG T+ + + +    E+  A+++ ++A   +E  G
Sbjct: 58  VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAG 117

Query: 336 DGTXSVVII 362
           DGT +  ++
Sbjct: 118 DGTTTATVL 126


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 175 APLGQLVWIRCWLTILGM 228
           +PL +++W+ CW  +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 175 APLGQLVWIRCWLTILGM 228
           +PL +++W+ CW  +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 178 PLGQLVWIRCWLTILGM 228
           PLG+++WI  W  +LG+
Sbjct: 145 PLGKMMWIFAWRWLLGL 161


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 228  VTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGD 338
            +TV N  A +    +      KVL +L   +DEE+ D
Sbjct: 979  ITVDNLDAQVQSCADSTELLIKVLSDLGSTEDEEISD 1015


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
 Frame = +2

Query: 59  IKNVDYSRTFVCSRDKIL--------RRPSENTKRNGSSGYSKHSK 172
           I + DYS+T   S   I+        R+PS+  + NG+ G   HS+
Sbjct: 49  IHDYDYSKTSFSSSPPIVANDTVSNVRKPSDTKQVNGAGGQVNHSR 94


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 14  KRDGDFKXEFCVKNTIKNVDYSRTFVCSRDKILRRPSENTKRNGSSGYSKHSKELP 181
           +R G F  E C+  T+ + D       +R+KILR  ++  K +G   + + +K+ P
Sbjct: 332 RRAGRFDREICL--TVPSQD-------AREKILRTMAKGLKLSGDFDFRQLAKQTP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,743
Number of Sequences: 5004
Number of extensions: 25523
Number of successful extensions: 80
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)