Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E21
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    91   1e-19
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.20 
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    25   5.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.4  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    24   9.8  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    24   9.8  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 40/72 (55%), Positives = 58/72 (80%)
 Frame = +3

Query: 150 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 329
           P SKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 330 ATAYVGIHPFKV 365
           A+A VGI   KV
Sbjct: 92  ASAPVGIDASKV 103



 Score = 58.0 bits (134), Expect = 7e-10
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +2

Query: 53  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLX*GTKTKIQCKIHAYSQRR 211
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 341 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLTFVVSTYNLNFIVFANRH 192
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 223 LYVDTTKVNRLAK*CRCIVKSLLYTLRGF 309
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +1

Query: 28   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 147
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 295 TLRGFKEKRPMVQQHMSAFTPSKCVIVKLKMNXDRKAILXRQSKGPTGCTWQR 453
           +L    EK     QH    TP   V +K  +  DR A    +++G T  T+Q+
Sbjct: 102 SLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQ 154


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 326 IGLF--SLNPLNVYNKLFTIHLHHFANLLTFVVSTYNLNFIVF 204
           I LF  ++N  N++ K F+   +H AN + F  +  N  +++F
Sbjct: 181 ISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,317
Number of Sequences: 5004
Number of extensions: 34421
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)