Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_E17
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 113 5e-27
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 113 5e-27
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 113 5e-27
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 113 5e-27
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 113 5e-27
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 67 8e-13
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 32 0.027
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 29 0.19
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 1.0
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 27 1.0
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 1.3
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 2.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 3.1
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 3.1
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 24 5.4
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 23 9.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 23 9.4
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IPKEST 290
I KEST
Sbjct: 61 IQKEST 66
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IPKEST 290
I KEST
Sbjct: 61 IQKEST 66
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IPKEST 290
I KEST
Sbjct: 61 IQKEST 66
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IPKEST 290
I KEST
Sbjct: 61 IQKEST 66
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 273 IPKEST 290
I KEST
Sbjct: 137 IQKEST 142
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 273 IPKEST 290
I KEST
Sbjct: 213 IQKEST 218
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 273 IPKEST 290
I KEST
Sbjct: 289 IQKEST 294
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 273 IPKEST 290
I KEST
Sbjct: 365 IQKEST 370
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 113 bits (273), Expect = 5e-27
Identities = 55/66 (83%), Positives = 60/66 (90%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEG PPDQQRLIFAGK LEDGRT+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IPKEST 290
I KEST
Sbjct: 61 IQKEST 66
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 66.9 bits (156), Expect = 8e-13
Identities = 28/61 (45%), Positives = 42/61 (68%)
Frame = +3
Query: 93 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTIIRLH 272
M I VKTLTGK I L+++ +D + +K ++++KEG PP QQRLI+AGK + D + H
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 273 I 275
+
Sbjct: 61 L 61
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 31.9 bits (69), Expect = 0.027
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 120 GKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLED 248
GK LE+E ++T +K ++ PP++Q++I G L+D
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKD 52
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.19
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 87 TTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTI 260
T + + +K + + V++ ++ +K I ++QRLI+AG+ L+D ++
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESL 59
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 51 DNFNNFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK 191
+N N F ETT + L + + +++E + EN+K+ ++ K
Sbjct: 222 NNLNQIVRFIFETTADMIGIDLAKRQVPIQLERTSASENLKSNLKIK 268
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 1.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 6 SLKELPSCTTCPTICDNFNNFCEFQKETTMQIFVKTLTGKT 128
SLK L CT P + + N F +T ++ L G T
Sbjct: 163 SLKRLRDCTLDPALGSEYTNLYAFVDDTALEDLKTRLRGVT 203
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 26.2 bits (55), Expect = 1.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 42 TICDNFN----NFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPD 209
T+ DNF+ NFC + +KT+ I VEA ++ + V I+D + PD
Sbjct: 164 TLSDNFDRLVLNFCRNIFQLVKSGHIKTIV--QIFKIVEAEESSDEVLKSIRDAKSSLPD 221
Query: 210 QQ 215
Q
Sbjct: 222 SQ 223
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 2.3
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 21 PSCTT-CPTICDNFNNFCEFQ---KETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQD 188
PSC+ ++ D+ N +Q +T + +VK + GKT L VE + +E KA + +
Sbjct: 202 PSCSRDVKSLLDHLYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVEE-KALVDE 260
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 3.1
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = -2
Query: 301 PNGGVDSFGICNRIMVRPSSSGFPAKISRC*SGGXPSLS*IFAFTFSMVSDASTSNVMVL 122
P SF + PSSS F + G P + S++S AS S+ VL
Sbjct: 192 PASSTSSFSTITNTSMIPSSSSFTT------TTGSPYYNTSSFLPSSVISSASLSSSSVL 245
Query: 121 PVRVFTKICMVVSFWNS 71
P + T V+ +S
Sbjct: 246 PTSIITSTSTPVTVSSS 262
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 3.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 51 DNFNNFCEFQKETTMQIFVKTLTGKTITLEVEASDTIEN 167
D+ N +F K QIF + G TIT +E I N
Sbjct: 18 DSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHN 56
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 227 ENQSLLIWRXALFVLNFCFYIFYGVGCF 144
+N LL ++ F N CF F G CF
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCF 187
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 23.4 bits (48), Expect = 9.4
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Frame = +3
Query: 108 KTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGK---------PLEDGRTI 260
K+ + + IT E+ +E + K K P ++ I + + PL+ +
Sbjct: 251 KSTSTQPITFELNDDTLLEKISFKEDQKSLAPSEELDPILSSEDPNHPSKLDPLDASLLL 310
Query: 261 IRLHIPKESTPPFGITSEK 317
HI K + P G+T E+
Sbjct: 311 AFCHIIKNNNPDDGLTREE 329
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 23.4 bits (48), Expect = 9.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 96 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKPLED 248
+I V T+ K +V + T+ +K I P D+ +LI AG+ L +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRN 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,452
Number of Sequences: 5004
Number of extensions: 22714
Number of successful extensions: 81
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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