Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E17
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.75 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.75 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   3.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   3.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 144  EASDTIENVKAKIQDKEGXPPDQQRLIFAGKPL 242
            ++ DT E  K  +Q KEG     Q+  F G PL
Sbjct: 931  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPL 963


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 144  EASDTIENVKAKIQDKEGXPPDQQRLIFAGKPL 242
            ++ DT E  K  +Q KEG     Q+  F G PL
Sbjct: 927  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPL 959


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 150 SDTIENVKAKIQDKEGXPPDQQRLIFAGKPLEDGRTII 263
           +DT+   K KI  K    PD + L+   K  E G T++
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTLV 768


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 322 SHFSDVIPNGGVDSFGICNRIMVRPSSSGFPAKI 221
           S  +DV  +  +DSF +     VRP+  G P ++
Sbjct: 5   SMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEV 38


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 322 SHFSDVIPNGGVDSFGICNRIMVRPSSSGFPAKI 221
           S  +DV  +  +DSF +     VRP+  G P ++
Sbjct: 5   SMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEV 38


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 275 NM*SDNGPSVFKWFPSENQSLLIWR 201
           +M +D+G  + K  PSE   +L W+
Sbjct: 363 SMFNDSGNPILKAKPSEVVQILGWK 387


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 3   DSLKELPSCTTCPTI 47
           + L+E PSC   PTI
Sbjct: 362 EELQEAPSCGGGPTI 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,734
Number of Sequences: 438
Number of extensions: 1529
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)