Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E16
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 250 VLVTQTVSLANSPVFFLAIFLFTNFVSFFLR 158
           ++V  + S A    + + IFL   F+SFF R
Sbjct: 558 IIVDSSTSGATIVNYSIMIFLSAVFISFFQR 588


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +2

Query: 293 IEEDEDEQYTSDDEEQEDSAD 355
           ++ED+D+    DD++  ++A+
Sbjct: 389 VDEDDDDDGDDDDDDDVEAAN 409



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 296 EEDEDEQYTSDDEEQED 346
           E DED+    DD++ +D
Sbjct: 388 EVDEDDDDDGDDDDDDD 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,553
Number of Sequences: 438
Number of extensions: 3124
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)