Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_E10
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572... 30 0.90
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120... 28 3.6
05_07_0056 + 27382708-27383871,27384450-27384818 28 3.6
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 3.6
12_02_1111 - 26157796-26160330 27 4.8
12_01_0081 - 657672-657713,657993-658151,658359-658919 27 4.8
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 27 4.8
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 27 4.8
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 27 4.8
01_05_0595 - 23509472-23509872,23509991-23510045 27 4.8
07_03_0455 + 18374327-18374533,18375136-18375482,18375959-183761... 27 6.3
12_02_0634 + 21416205-21416954 27 8.3
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 27 8.3
>02_05_0523 -
29755007-29755856,29756381-29756940,29757058-29757275,
29757941-29758067
Length = 584
Score = 29.9 bits (64), Expect = 0.90
Identities = 25/102 (24%), Positives = 36/102 (35%)
Frame = -1
Query: 417 GVFYELFFLFIKIYH*SNKTLFHLMKKYFEHFYIIKCINILMLPGVFFKTTTILYFCXXX 238
GV L ++ H N + + K+ YI I M + + T C
Sbjct: 54 GVGVNLVVFLRRVLHQDNAEAANSISKWTGTVYIFSLIGAFMSDSYWGRYIT----CAIF 109
Query: 237 XXXXXXXKVVM*LESWFLLASPEALEYIRDHVLPCPAPAVLG 112
V++ L SWFLL P +H C AP+ G
Sbjct: 110 QMIYVTGLVILSLASWFLLVKPTGCGAAGEH---CDAPSSAG 148
>08_01_0153 -
1200121-1200465,1201693-1202920,1204517-1204602,
1205145-1205272,1205957-1205969
Length = 599
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 414 VFYELFFLFIKIYH*SNKTLFHLMKKYFEHFYIIKCINI 298
+ YELF F++ S +T L K+Y +H +IIK +++
Sbjct: 280 IVYELFLRFVQ----SPETDAKLAKRYVDHGFIIKLLDL 314
>05_07_0056 + 27382708-27383871,27384450-27384818
Length = 510
Score = 27.9 bits (59), Expect = 3.6
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 342 KKYFEHFYIIKCINIL 295
KKYF+H +I+K +N+L
Sbjct: 203 KKYFDHSFIVKLLNLL 218
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 201 LESWFLLASPEALEYIRDHVLP 136
L S+F + P+ E+ +DHVLP
Sbjct: 2279 LVSYFAIREPQKAEFYKDHVLP 2300
>12_02_1111 - 26157796-26160330
Length = 844
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 201 LESWFLLASPEALEYIRDHVLPCPAPAVLGSW 106
LESW L P L+ I +HV+ A + SW
Sbjct: 512 LESWERLLPPIVLQSILEHVIMPKLSAAVDSW 543
>12_01_0081 - 657672-657713,657993-658151,658359-658919
Length = 253
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 49 PADPDSLSTLNLVTHPT 99
P +PD L LNL THPT
Sbjct: 109 PQEPDCLYVLNLRTHPT 125
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 74 P*TWSRILHWYQEPSTAGAGQG 139
P TWS+ W++ T+GAG+G
Sbjct: 70 PVTWSKEKTWWKSLGTSGAGKG 91
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 39 HCAACGPGLTKHPKPG 86
HC ACG GL KHP+ G
Sbjct: 358 HCYACGDGL-KHPEDG 372
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 25 RRRAAT-VPPADPDSLSTLNLVTHPTLVPRTQYS 123
R RA T +PPA PDSL ++ T +P T Y+
Sbjct: 503 RHRAGTPLPPALPDSLKYDEVLLRATGLPSTAYN 536
>01_05_0595 - 23509472-23509872,23509991-23510045
Length = 151
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 58 PDSLSTLNLVTHPTLVPRTQYSRSGTGXYVIPDIFQRFGGSEE 186
P L L PT+VP T S G + D+ Q +EE
Sbjct: 28 PSDAVQLGLCAQPTMVPETAVSSRGHVVFAHVDVLQHGEANEE 70
>07_03_0455 +
18374327-18374533,18375136-18375482,18375959-18376193,
18376629-18376724,18377392-18377463,18377596-18377700
Length = 353
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 369 SNKTLFHLMKKYFEHFYIIKCI-NILMLPGVFF 274
S+K F + +KYF HFY++ + ++L ++F
Sbjct: 66 SSKAKFTVPQKYFMHFYVVGVLATTILLLAIWF 98
>12_02_0634 + 21416205-21416954
Length = 249
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 80 TWSRILHWYQEPSTAGAGQGST*SRIYSSASGEAR 184
+WSR W + P+ G G+G R A+G R
Sbjct: 103 SWSRGRWWRRRPALRGRGRGGRRRRSGGDATGRRR 137
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 94 PTLVPRTQYSRSGTGXYVIPDIFQRFGGSEEKPR 195
P VP+T Y G YV+P F+ GGS PR
Sbjct: 515 PFNVPQTVYRPRPEGGYVMPQ-FRYSGGSNGFPR 547
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,333
Number of Sequences: 37544
Number of extensions: 230306
Number of successful extensions: 803
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -