Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_E03
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 KTPTSLDINPSGLLFAFVELNHYNNEC 272
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +2

Query: 119 VCLHAQYKNACQNGALTGQISPSSQNTNIIRHQ----SLWTFIRIRGTK-----SLQQ*V 271
           +CLH  +K  C N    G   PS+ N   +R       L  FI I         ++ Q  
Sbjct: 69  ICLHKNFKKECFNFKGEGTAIPSTFNEETVRPWVELFHLEIFICILNFTLWIYLAIDQWK 128

Query: 272 RVRRSHGLRPSICSLTMSAVCCSKLRISSMMIVICLK-TFRALQRRSKSITLRVS 433
           R+ +   ++ SI  L++S  C   +RI    + IC+   + +     KSI L++S
Sbjct: 129 RIEKD--VKTSISMLSLS--CSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,165
Number of Sequences: 27780
Number of extensions: 223894
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)