Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_D21
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   123   1e-29
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   122   2e-29
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    45   5e-06
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   0.62 
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   1.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   5.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   7.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   7.7  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  123 bits (296), Expect = 1e-29
 Identities = 65/121 (53%), Positives = 79/121 (65%)
 Frame = +1

Query: 40  LRSTKPSRKSVFSGSSLTGELISISSLXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 219
           LR  +  R   + G  L  +L+ +S+     EQL++L H         GL       ++K
Sbjct: 15  LRKKRTFRTFAYRGVELE-QLLDLSA-----EQLVDLFHARARRRMLRGLGPNASRFIRK 68

Query: 220 LRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTSNQVEIKPEMIGHYLXEF 399
           LR+AK EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK  NQVEI+PEMIGHYL EF
Sbjct: 69  LRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEF 128

Query: 400 S 402
           S
Sbjct: 129 S 129


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  122 bits (295), Expect = 2e-29
 Identities = 65/121 (53%), Positives = 79/121 (65%)
 Frame = +1

Query: 40  LRSTKPSRKSVFSGSSLTGELISISSLXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 219
           LR  +  R   + G  L  +L+ +S+     EQL++L H         GL       ++K
Sbjct: 14  LRKKRSFRTFAYRGVELE-QLLDLSA-----EQLVDLFHARARRRMLRGLGPNASRFIRK 67

Query: 220 LRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTSNQVEIKPEMIGHYLXEF 399
           LR+AK EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK  NQVEI+PEMIGHYL EF
Sbjct: 68  LRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEF 127

Query: 400 S 402
           S
Sbjct: 128 S 128


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 44.8 bits (101), Expect = 5e-06
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = +1

Query: 268 VKTHLRNMIIVPEMVGSIVGIYNGKTSNQVEIKPEMIGHYLXEFS 402
           +KT +R+  I+P MVG+   ++NGK+   V+I  +MIGH L EF+
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFA 94


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 235 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 336
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 330 NADN*TDHLGNDDHVSQVSLHDLWLLIR 247
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 282
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 12   LLSNKQXNMAEVDETLKKKRIFRKFTYRGVDLDQLL 119
            +L  ++ N   + + L  K  F K TY+  DLD+L+
Sbjct: 1218 VLELEKENEFTIGQKLLVKGRFEKMTYQYSDLDELI 1253


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 15  LSNKQXNMAEVDETLKKKRIFRKFTYRGV 101
           LSN Q ++ +V+  +K+K+ F  FT  GV
Sbjct: 493 LSNIQCDLKDVNYYIKRKQGFPTFTDLGV 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,644
Number of Sequences: 5004
Number of extensions: 24506
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)