Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_D21
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   109   7e-25
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   5.0  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   5.0  
Z48240-1|CAA88283.1|  312|Caenorhabditis elegans DIF-1 protein.        27   6.7  
X76115-1|CAA53721.1|  312|Caenorhabditis elegans carrier protein...    27   6.7  
U61949-5|AAB03153.2|  312|Caenorhabditis elegans Differentiation...    27   6.7  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  109 bits (262), Expect = 7e-25
 Identities = 53/95 (55%), Positives = 66/95 (69%)
 Frame = +1

Query: 118 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 297
           L M  EQ  +L+          GLKRK +AL+ K+++AKK A   EKP  VKTHLR+MII
Sbjct: 32  LDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMII 91

Query: 298 VPEMVGSIVGIYNGKTSNQVEIKPEMIGHYLXEFS 402
           +PE+VG ++GIYNGK  NQ EIKPEMIG YL EF+
Sbjct: 92  LPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFA 126



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +3

Query: 57  LKKKRIFRKFTYRGVDLDQLL 119
           LKKKR FRKF YRGVDLDQLL
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLL 32


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 232   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTSN 351
             K+  P +E  EIV     + +I+ E+ G  VG+Y     N
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLYKVLVEN 14528


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 232   KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTSN 351
             K+  P +E  EIV     + +I+ E+ G  VG+Y     N
Sbjct: 14489 KEIIPTDENTEIVNEGSMSALIIHELAGEDVGLYKVLVEN 14528


>Z48240-1|CAA88283.1|  312|Caenorhabditis elegans DIF-1 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 37  WLRSTKPSRKSVFSGSSLTGELISI--SSLXMPNEQLMELMHXXXXXXXXXGLKRK-PMA 207
           WL+ T PS++  F  ++  G L  +  + + +P E++  L+          G+    P+ 
Sbjct: 92  WLQQTDPSQEMTFIQNANAGALAGVFTTIVMVPGERIKCLLQVQQAGSAGSGVHYDGPLD 151

Query: 208 LVKKL 222
           +VKKL
Sbjct: 152 VVKKL 156


>X76115-1|CAA53721.1|  312|Caenorhabditis elegans carrier protein
           (c1) protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 37  WLRSTKPSRKSVFSGSSLTGELISI--SSLXMPNEQLMELMHXXXXXXXXXGLKRK-PMA 207
           WL+ T PS++  F  ++  G L  +  + + +P E++  L+          G+    P+ 
Sbjct: 92  WLQQTDPSQEMTFIQNANAGALAGVFTTIVMVPGERIKCLLQVQQAGSAGSGVHYDGPLD 151

Query: 208 LVKKL 222
           +VKKL
Sbjct: 152 VVKKL 156


>U61949-5|AAB03153.2|  312|Caenorhabditis elegans Differentiation
           abnormal protein 1 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 37  WLRSTKPSRKSVFSGSSLTGELISI--SSLXMPNEQLMELMHXXXXXXXXXGLKRK-PMA 207
           WL+ T PS++  F  ++  G L  +  + + +P E++  L+          G+    P+ 
Sbjct: 92  WLQQTDPSQEMTFIQNANAGALAGVFTTIVMVPGERIKCLLQVQQAGSAGSGVHYDGPLD 151

Query: 208 LVKKL 222
           +VKKL
Sbjct: 152 VVKKL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,071,945
Number of Sequences: 27780
Number of extensions: 137344
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)