Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_D20
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 38 0.008
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 32 0.39
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 31 0.68
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 0.90
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 2.7
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 27 8.4
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +2
Query: 299 ARMFVQSDLEHIKQNLRQKTNTLISRXDDLNNRKVCLNHTLNESESNIRDLIQPKKDEK* 478
A M +Q+DL+ +K L +K N R DLN +K L H ++ES+S L + K +
Sbjct: 185 ATMVLQNDLDWLKYQLNEKAN----RLQDLNQQKHLLEHRISESDSVATYLEESMKVTES 240
Query: 479 KSASSRIKPNTFKKIDD 529
+ S +++ + K+ D
Sbjct: 241 RVQSLKLEYSKMKRERD 257
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 311 VQSDLEHIKQNLRQKTNTLISRXDDLNNRKVCLNHTLNE--SESNIRDLIQ 457
+++DLEH K+N RQ I D+L K+ N+ L E +E R+L +
Sbjct: 261 MKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNERKTRELTE 311
>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 125 LELKQAFVDLQVLMIETKKTIENIDHQLA-VLGRMQMHTNLTQR 253
LEL+Q F+D+ VL+ + ++NI+ Q++ +Q TNL Q+
Sbjct: 1092 LELQQIFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQK 1135
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.7 bits (66), Expect = 0.90
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Frame = +2
Query: 92 TTIIKMAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLP 271
T I+MA ELKQ V+L+ + E KK +EN+ Q + L +E+
Sbjct: 365 TKEIQMANEKLNELKQTKVNLENAVSELKKEVENLTEQ-------NRSSELLIQELRDEI 417
Query: 272 PGTKTYESMARMFVQSDLEHIKQNLRQKTNTL------ISRXDDLNNRKVCLNHTLNESE 433
K ++ + +QS I Q +K TL + R DL ++ + L L E E
Sbjct: 418 NSLKDSKNELQNEIQSLRSTISQLNTEKDATLFQHQQSVERVSDLESQLLKLQPELEEIE 477
Query: 434 SNIRDLIQPKKDEK*KSASS 493
++ L+Q + ++ ++ S+
Sbjct: 478 QKVQMLMQDLEQKRQEADSA 497
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/102 (25%), Positives = 46/102 (45%)
Frame = +2
Query: 161 LMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQ 340
L ++ K I+NIDHQ R++ + L +RE L + + M ++ ++
Sbjct: 565 LALKEKSLIDNIDHQ-----RLE-NEELLKRERADLQRNLQLHRHELEMEMEKKQASKER 618
Query: 341 NLRQKTNTLISRXDDLNNRKVCLNHTLNESESNIRDLIQPKK 466
L +K N L + D + N L +ES I+ ++ KK
Sbjct: 619 ELEEKENELNRKMDFVENE---LKRAAELNESKIQKILLEKK 657
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 27.5 bits (58), Expect = 8.4
Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Frame = +2
Query: 101 IKMAKTVDLE--LKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPP 274
+K ++ + LE LK++ L L + + IEN+ + + Q+ + + + +D+
Sbjct: 396 LKNSEKMQLEKKLKESEASLNDLKVTSNMQIENM-----AMEKRQLESTIKRLMLDL--- 447
Query: 275 GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRXDDLNNRKVCLNHTLNESESNIRDLI 454
E + + H++ +L + + ++++N + L T E IR+L+
Sbjct: 448 ---EKEKGKNNILSEQIIHLETSLDENKQ---KQLENISNTNI-LADTTKSHEKKIRELL 500
Query: 455 QPKKDEK*KSASSRIKPNTF-KKIDDWNXNYPHEINC 562
+ +DE+ +SAS N +++ D + I C
Sbjct: 501 KQLEDERSRSASMNDHLNVLQQQLSDAQNYFQKNIAC 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,074
Number of Sequences: 37544
Number of extensions: 232111
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -