Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_D18
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.0  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   2.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   6.0  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   7.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 246 EPYTRARAELSWLSLGTTRASTAEVTWRGERCTTS 350
           EPY + ++++S +++ T  ASTA++  R +   T+
Sbjct: 389 EPYLKDQSKISEIAVKTAMASTADILSRSKGSATA 423


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 436 PQERQRRYLRASPVSPAGSDLR 501
           PQE QRR  R+S ++P+ S+ R
Sbjct: 15  PQETQRRLSRSSTITPSVSEYR 36


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 115 RVHYDTSELAGRCDSVRSYMCMCARACVVS*VGPVTEI 228
           ++   TS      D+V+ Y+C+     VVS V PV EI
Sbjct: 431 KIRSPTSTPTPLIDAVKQYICLALAKNVVSHVLPVFEI 468


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 238 HHERFRSRAQPKTPHKHVHTYTYMIGHCHSGPLA 137
           HH   R    P  PH H H   Y   +C   P++
Sbjct: 169 HHPHTRPPHHP--PHPHFHNNNYPPPYCFQSPVS 200


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 566 GAHVSARHGQGPGGYRSXAHTXRRSEPAGETG 471
           G+     HG+ PGG     +  RR    G TG
Sbjct: 433 GSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTG 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,974
Number of Sequences: 5004
Number of extensions: 47567
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)