Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_D18
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 57 8e-09
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 57 8e-09
AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 57 8e-09
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 57 8e-09
AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 57 8e-09
AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 57 8e-09
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 57 8e-09
AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 57 8e-09
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 57 8e-09
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 28 4.1
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 28 5.5
Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68003-3|CAA91977.1| 849|Caenorhabditis elegans Hypothetical pr... 27 9.5
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 27 9.5
DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 27 9.5
>AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice
variant 1b-7b protein.
Length = 527
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 88
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 88
>AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice
variant 1a-7b protein.
Length = 564
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 125
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 125
>AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated
protein 62, isoform g protein.
Length = 490
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 20 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 51
>AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated
protein 62, isoform b protein.
Length = 527
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 88
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 88
>AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated
protein 62, isoform a protein.
Length = 564
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 125
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 57.2 bits (132), Expect = 8e-09
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 440 KRDKDAIYGHPLFPLLALIFEXCELXTCTPRD 535
KRDK++IY HPL+PLL L+FE CEL T TPRD
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRD 125
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 25 RRASRFTAPRSATPRPEPPTNTLHS 99
+RA R++ P S+TP P PP ++ S
Sbjct: 163 KRAPRYSPPPSSTPTPTPPPSSSSS 187
>Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 159 CPIIYVYVCTCLCGVL 206
C YVYVC C+C VL
Sbjct: 376 CFRFYVYVCVCVCAVL 391
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = -3
Query: 539 QGPGGYRSXAHTXRRSEPAGETGDARK*RLCLSCGL--VVPRGGRERVLPAGGSALEPGG 366
+GP G A T R PA + G+ G V P R R LP SA PG
Sbjct: 631 RGPRGPAPAAATPAR--PAAQPGNVNVAGTPAPTGTPAVAPAAPR-RDLPGAASAATPGA 687
Query: 365 DGSACARGTSLPP 327
+A A T PP
Sbjct: 688 PETAAADATPAPP 700
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 177 YVCTCLCGVLGW-ARDRNRSWWPAEPYTRARAELSWLSLGTTRASTAEVTWRGERCTTST 353
Y C+CL G + NR + A+P + + + T T + W GE C T
Sbjct: 420 YTCSCLSQYFGTNCEEINRCNY-ADPCVNGDCQTTVDGITTNYTCTCDSGWTGENCDTMI 478
Query: 354 G*PIP 368
IP
Sbjct: 479 DYCIP 483
>Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical
protein F39D8.2b protein.
Length = 241
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 452 DAIYGHPLFPLLALIFEXCELXTCT 526
+ I HPL P++ L+ E CE T
Sbjct: 25 EKIASHPLMPIVELLLEKCETAATT 49
>Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical
protein F39D8.2a protein.
Length = 281
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 452 DAIYGHPLFPLLALIFEXCELXTCT 526
+ I HPL P++ L+ E CE T
Sbjct: 65 EKIASHPLMPIVELLLEKCETAATT 89
>Z68003-3|CAA91977.1| 849|Caenorhabditis elegans Hypothetical
protein E02H4.4 protein.
Length = 849
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 431 VVPRGGRERVLPAGGSALEPGGDGSA 354
VVP GGR + GG ++ PGG GSA
Sbjct: 741 VVP-GGRGSLEGGGGESVVPGGRGSA 765
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 416 GRERVLPAGGSALEPGGDGSACARGTSLPPPCN 318
G E V+ G EPG G+A ARG + PCN
Sbjct: 284 GEEGVIGEPGKPGEPGKSGAAGARGPA--GPCN 314
>DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor
PSA-3 splice variantbeta protein.
Length = 241
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 452 DAIYGHPLFPLLALIFEXCELXTCT 526
+ I HPL P++ L+ E CE T
Sbjct: 25 EKIASHPLMPIVELLLEKCETAATT 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,034
Number of Sequences: 27780
Number of extensions: 349627
Number of successful extensions: 890
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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