Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_D09
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.5  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   3.4  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   3.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   4.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   7.7  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/71 (28%), Positives = 27/71 (38%)
 Frame = -3

Query: 533 SVRPNLXTRDPAKMKAFCMNKPTPGQACLEELALT*FAKSIQQAAMRDAKPTTNPRKSQS 354
           S  PN     PA   +   N P+   A    LA T    +        +  ++NPR S  
Sbjct: 375 STFPNPSVASPAFPNSSTSN-PSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 353 LAPRGPMQPPV 321
           LA     +PPV
Sbjct: 434 LASNAENKPPV 444


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 355 LWLFLGFVVGFASLIAACWILFANYV 432
           LW   G ++GFA  I A  ++ AN++
Sbjct: 675 LWRNCGIILGFAIFILASSLILANFI 700


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 373 FVVGFASLIAACWILFAN-YVNASSSKHAW 459
           F++G+ S  AA W+ F   +++ S  K  W
Sbjct: 236 FIIGYVSTFAAYWLGFCGIFLDYSRRKRVW 265


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 429 IVRKEYPAGSNEGRKTNNESKEEPKSGTTRSHATTCV 319
           + + E PA  +     N  SKE  K  +T  H TT V
Sbjct: 278 LAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPV 314


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 482 CMNKPTPGQACLEELALT*FAKSIQQAAM 396
           CM  P   +AC+++L+ T F  +++  A+
Sbjct: 225 CMAHPETLEACIKDLSATTFVATVESVAL 253


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 346  GARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAW--PGVGL 474
            G++L      VV   S +   W++    +   S+KH W  P +GL
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSNKHTWMVPVLGL 1228


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +1

Query: 352 RLWLFLGFVVGFASLIAACWI--LFANY-VNASSSKHAWPGVGLFMQNAFIFAGSLVXKF 522
           R W FL F  G  + +   WI  LF  Y VN   SK       +      +  GSLV  F
Sbjct: 135 RFWFFLIFYYGIYNAVGLLWITKLFHIYSVNWCPSKLGGTITYILFWMFSLLVGSLVVYF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,307
Number of Sequences: 5004
Number of extensions: 51840
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)