Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_D04
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567... 29 3.2
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 29 3.2
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 29 4.2
10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915... 28 7.4
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 28 7.4
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24... 27 9.7
07_01_0655 - 4910497-4911972,4912035-4912415 27 9.7
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 27 9.7
>07_03_1395 -
26255776-26256043,26256194-26256414,26256550-26256786,
26257476-26257776,26258027-26258106
Length = 368
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 501 RLVLVFAGLVYLTMTITTPALMLHGLDIAVASYFITVYNTYARQLENE 644
RL+L AGL Y +TT ++ + + I VA + YA++ +E
Sbjct: 282 RLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDE 329
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 171 FILG-YLTM-FTNVYNTGLLITLT-NYIGAGSHSFDRTTSFDSIDL 299
FI G Y+ + F N N+ L I LT NYI A S S T +FD ID+
Sbjct: 75 FIYGSYIGLHFANENNSFLAIKLTVNYIIAASSSNIYTKTFDGIDV 120
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +3
Query: 174 ILGYLTMFTNVYNTGLLITLTNYIGAGSH-SFD-----RTTSFDSIDLEELSEPTTTLQP 335
+L L + T + TL + + +H ++D R T+FDS++L+ + PT+ +
Sbjct: 620 VLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTSDVSN 679
Query: 336 AQQSSE 353
A++ S+
Sbjct: 680 AKEQSQ 685
>10_08_0791 -
20590744-20591211,20591379-20591439,20591525-20591592,
20592015-20592188,20592291-20592331,20592571-20592620,
20593083-20593171,20593250-20593324,20593631-20593719,
20593895-20593955,20594111-20594227,20594465-20594667,
20594785-20594842,20594951-20595103
Length = 568
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 466 PGRLLCSPTTQAMLTSNHAAFITIVIRSTNPTPLRRGDS 350
P RLL PT Q L + A V + PTP R DS
Sbjct: 516 PTRLLIPPTKQRSLDAGRAEVRVDVDSTPTPTPPERHDS 554
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 393 TIVINAAWLLVNIACVVGLHRRRPGNI 473
+++ +AA ++AC+VGL R+ GN+
Sbjct: 535 SLISDAASRTASLACIVGLSRKEDGNL 561
>11_01_0031 +
248264-248513,248519-249007,249178-249445,249631-249718
Length = 364
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 165 GCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRT-TSF 284
GC LG TN+ T +LIT+T Y S+ F + TSF
Sbjct: 60 GC-CLGLADPVTNIILTTILITITTYSRKKSYGFSMSHTSF 99
>07_01_0655 - 4910497-4911972,4912035-4912415
Length = 618
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 396 IVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGLVYLTMTITTPAL 563
+ +N N+A VVG ++ + A C V F G+V LTMT PAL
Sbjct: 88 VALNVFAGTTNLATVVGAFASDLYLGRYATVAAGC--VSTFIGMVILTMTAGVPAL 141
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 68 KFCQNDQTDSLQHVIVDF*FGQKMLLLL 151
K CQ Q D LQ+++++ G+K LL+L
Sbjct: 222 KPCQMTQMDQLQYMLIEQVVGRKFLLVL 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,821,322
Number of Sequences: 37544
Number of extensions: 348679
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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