Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_D02
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 305 4e-82
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 160 3e-38
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 139 5e-32
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 132 5e-30
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 124 2e-27
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 105 1e-21
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 99 8e-20
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 95 1e-18
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 90 5e-17
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 89 9e-17
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 86 6e-16
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 85 2e-15
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 81 3e-14
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 79 9e-14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 79 9e-14
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 75 1e-12
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 72 1e-11
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 71 2e-11
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 71 3e-11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 69 1e-10
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 66 5e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 63 6e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 60 5e-08
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 53 7e-06
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 52 9e-06
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 46 6e-04
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 40 0.039
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.052
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.052
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 39 0.12
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 37 0.49
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 35 1.5
UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.4
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 34 3.4
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 33 4.5
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 4.5
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 305 bits (750), Expect = 4e-82
Identities = 148/160 (92%), Positives = 148/160 (92%)
Frame = +3
Query: 93 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 272
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 273 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 452
RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 453 ILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGNF 572
ILPSGLLLVTGPFAFNSCPLRR PQRYVIGTSTRISLGNF
Sbjct: 145 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 184
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 160 bits (388), Expect = 3e-38
Identities = 82/158 (51%), Positives = 103/158 (65%)
Frame = +3
Query: 99 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 278
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 279 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 458
V LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Query: 459 PSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGNF 572
SGLLLVTGPFA NSCPLRR QRYVIGTS+++ LG F
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAF 176
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 139 bits (337), Expect = 5e-32
Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Frame = +3
Query: 108 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 275
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 276 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 449
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 450 GILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGN 569
L SGLLLVTGP N PLRR Q++VI TST+I + N
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISN 205
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 132 bits (320), Expect = 5e-30
Identities = 70/155 (45%), Positives = 94/155 (60%), Gaps = 2/155 (1%)
Frame = +3
Query: 105 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 284
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 285 LKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 458
LK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQL 144
Query: 459 PSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
+GLL VTGP+ N CPLRR Q YVI TST++ L
Sbjct: 145 KTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDL 179
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 124 bits (299), Expect = 2e-27
Identities = 69/154 (44%), Positives = 91/154 (59%)
Frame = +3
Query: 108 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 287
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 288 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 467
+R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 468 LLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGN 569
LLLVTGPF N PLRR PQ YVI TST I + +
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSD 161
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 105 bits (251), Expect = 1e-21
Identities = 55/113 (48%), Positives = 73/113 (64%)
Frame = +3
Query: 231 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 410
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 411 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGN 569
LAG + GKRVVL+ L SGLLLV+GP N PLRR Q+ VI TSTRI + N
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISN 156
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 99.1 bits (236), Expect = 8e-20
Identities = 53/113 (46%), Positives = 69/113 (61%)
Frame = +3
Query: 225 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 404
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 405 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
ILLAG G RVV++ L SG LLVTGP+A N PL R QRYVI TST I +
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDV 131
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 95.5 bits (227), Expect = 1e-18
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Frame = +3
Query: 282 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 452
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 453 ILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGNF 572
L SGLLLVTGPF +N PLRR Q YVI TSTRI + F
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKF 153
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 89.8 bits (213), Expect = 5e-17
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = +3
Query: 351 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQR 530
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 531 YVIGTSTRISLGN 569
YVI T TRI + N
Sbjct: 146 YVIATKTRIKIKN 158
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 89.0 bits (211), Expect = 9e-17
Identities = 57/157 (36%), Positives = 83/157 (52%)
Frame = +3
Query: 93 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 272
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 273 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 452
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 453 ILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
L SGLLLVTGPF N PLRR Q YVIGTST++ +
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 86.2 bits (204), Expect = 6e-16
Identities = 48/93 (51%), Positives = 60/93 (64%)
Frame = +3
Query: 279 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 458
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 459 PSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRI 557
SGLLLVTGPF+FN PLRR RYVI TST +
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 84.6 bits (200), Expect = 2e-15
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Frame = +3
Query: 228 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 395
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 396 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 80.6 bits (190), Expect = 3e-14
Identities = 45/101 (44%), Positives = 61/101 (60%)
Frame = +3
Query: 267 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 446
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 447 VGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISLGN 569
+ L SGL+L+TGPF N PLRR QRYVI TST+I + +
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSS 152
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 79.0 bits (186), Expect = 9e-14
Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +3
Query: 303 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 479
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 480 TGPFAFNSCPLRRXPQRYVIGTSTRISL 563
TGPF N P+RR Q YVI TST++ +
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDI 137
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 79.0 bits (186), Expect = 9e-14
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = +3
Query: 327 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 506
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 507 PLRRXPQRYVIGTSTRISL 563
P+RR Y+I TST++ +
Sbjct: 80 PVRRVNPAYIIATSTKVDV 98
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 75.4 bits (177), Expect = 1e-12
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = +3
Query: 345 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 518
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 519 XPQRYVIGTSTRISL 563
RYVI TS ++ L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 71.7 bits (168), Expect = 1e-11
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Frame = +3
Query: 234 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 392
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 393 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRI 557
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 70.9 bits (166), Expect = 2e-11
Identities = 39/92 (42%), Positives = 58/92 (63%)
Frame = +3
Query: 288 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 467
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 468 LLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
LL++GPF N PLRR RYVI TST++S+
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSV 93
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 70.5 bits (165), Expect = 3e-11
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Frame = +3
Query: 372 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRXPQRYVIGTS 548
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRR Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 549 TRISL 563
++++
Sbjct: 127 LKVNV 131
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 68.5 bits (160), Expect = 1e-10
Identities = 49/151 (32%), Positives = 75/151 (49%)
Frame = +3
Query: 108 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 287
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 288 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 467
++ K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 468 LLLVTGPFAFNSCPLRRXPQRYVIGTSTRIS 560
LL+TGP A N L R Q+ V+ TST I+
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 66.5 bits (155), Expect = 5e-10
Identities = 39/80 (48%), Positives = 49/80 (61%)
Frame = +3
Query: 324 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 503
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 504 CPLRRXPQRYVIGTSTRISL 563
PL+R YVI TST++ +
Sbjct: 98 VPLKRVNSAYVIPTSTKVDV 117
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 62.9 bits (146), Expect = 6e-09
Identities = 32/56 (57%), Positives = 37/56 (66%)
Frame = +3
Query: 396 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R Q VI T T++ +
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDI 68
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +3
Query: 372 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRXPQRYVIGTS 548
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RR RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 549 TRISLGN 569
T + + +
Sbjct: 89 TTVDISS 95
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 52.8 bits (121), Expect = 7e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 375 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTR 554
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 555 ISL 563
I +
Sbjct: 109 IEV 111
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 52.4 bits (120), Expect = 9e-06
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3
Query: 432 KRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
KRVV + L SGLLL+TG F N PLRR Q YVI TST++ +
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDI 199
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 46.4 bits (105), Expect = 6e-04
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +3
Query: 318 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 497
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 498 NSCPLRRXPQRYVIGTSTRISL 563
N PL R +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 40.3 bits (90), Expect = 0.039
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Frame = +3
Query: 147 KSKMFHKK---AKYKFIGXXXXXXXXXXXLTVVVKQIG-GEKNGGTRTVPLKRRKSFYPT 314
++ HKK A+ FI L V+ + G K + ++ FYP
Sbjct: 151 RTSTLHKKIASARLDFIKLSGSENELEALLQVLEPSLAKGNKKKKVLSNTEEKLPRFYPA 210
Query: 315 QEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFA 494
+ ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+TG F
Sbjct: 211 DD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLITGSFK 263
Query: 495 FNSCP 509
N P
Sbjct: 264 INDVP 268
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.052
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 375 RPNLKIGTVCILLAGRHAGKRVVLVGILP 461
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.052
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 378 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYV 536
P + +G + +++AGR AG++VV+V I+ +LVTG N RR +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 38.7 bits (86), Expect = 0.12
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 378 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLR 515
P +++G VCI AGR AGK V+V IL ++V G C ++
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIK 47
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 36.7 bits (81), Expect = 0.49
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 384 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
+ IG V + + GR AG++ V+V I+ +++TGP RR ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 468 LLLVTGPFAFNSCPLRRXPQRYVIGTSTRISL 563
L GPF+ N P+RR Q++V+ TST+I +
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDV 41
>UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 84
Score = 34.3 bits (75), Expect = 2.6
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -1
Query: 194 FANELVFSLLV--EHLGFGETHHSVAQIIVPRFFR----RFFLSHRTCRCGSRLGRRF 39
FA EL FS++ EH+G T + P+ FR RF + R+CR G+R RRF
Sbjct: 20 FAGEL-FSVIARCEHIGGPNTDVDRRAVFWPKIFRFAAGRFQSTFRSCRVGARYSRRF 76
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 342 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 500
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 33.9 bits (74), Expect = 3.4
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 435 RVVLVGILPSGLLLVTGPFAFNSCPLRRXPQR--YVIGTSTRIS 560
+++++GI+P +L++ F F+S L PQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 3.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 258 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 389
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 33.5 bits (73), Expect = 4.5
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 381 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRXPQRYVIGTSTRIS 560
+ KIG + I+ + GK+ V +G G LL++G FN + +YV+ + +
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 561 LGNF 572
NF
Sbjct: 101 GLNF 104
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 457 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 323
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,779,218
Number of Sequences: 1657284
Number of extensions: 11600936
Number of successful extensions: 29063
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 28098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29018
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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