Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_C24
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 43 4e-05
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.11
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 29 0.44
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 29 0.77
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 27 3.1
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 3.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 3.1
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 5.5
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 25 7.2
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 25 7.2
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 7.2
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 285 CWVCFATEADDKLAAWVQPCKCIGTTKWVHQSCLQRWVDEKQRGNITRKVLCPQCKAEY 461
C VC A D + PCKC G+ ++VHQ CL W+ ++K C CKA++
Sbjct: 8 CRVCRCEGAPD--SPLFHPCKCTGSIRYVHQECLVEWLGH------SKKTHCELCKAKF 58
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 273 NAKSCWVCFATEADDKLAAWVQPCKCIGTTKWVHQSCLQRWVDEKQRGNITRKVLCPQCK 452
+A SC +C T + + +Q CK + HQ+C+ +W+ GN + CP C+
Sbjct: 762 SADSCLICLETYTNGDICRKLQACK-----HFFHQACIDQWL---TTGNNS----CPLCR 809
Query: 453 A 455
A
Sbjct: 810 A 810
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 29.5 bits (63), Expect = 0.44
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 119 PEIGYAPFFKKKTAKILLLWWNGVEH 196
P+ G+ P+FK + WW V+H
Sbjct: 190 PQYGFTPWFKLICEHFMFKWWQDVDH 215
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 328 RGYNRVNVSEQQNGFTSHVS 387
+GY VN+SE QNG T++++
Sbjct: 61 QGYQAVNISESQNGVTAYLA 80
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 44 NCDNKKDISXIL*K*VYYISLYSSLPEIGYAPFFKKKTAKILLLWWNGVEHNVG 205
NC N S +L Y+ +S PE+ + + K ++IL + W+G +G
Sbjct: 153 NCGNYGGASDLL----YHFRAFSKDPELNASATWGKFASEILTVDWDGAMEELG 202
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 231 SVSSSQALQPAEDENAKSCWVCFATEADDKLAAWVQPCKCIGTTKWVHQSCLQRWVDEKQ 410
SVS ++ + + C VC E+DD+ + +C + W H +C+ + DE +
Sbjct: 33 SVSDNEENETSSTGEVTRC-VCGIVESDDEASDGGLYIQCDQCSVWQHGNCV-GFADESE 90
Query: 411 RGNITRKVLCPQCKAEYIVVF 473
+ C C E+ V+
Sbjct: 91 ---VPEVYYCEICHPEFHKVY 108
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 622 PTTCMTVTAPYVMAIQYMEPSSTPPAINGHILWVISSIASSMATKAPMDGNTTMYSA 452
P ++ P + A+ ME + PP + SSIA + P+ G TM+ A
Sbjct: 427 PLVTPSLPVPSIPAVPGMEAMAMPPGVT-------SSIAVPTTSSMPLQGMPTMFGA 476
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -2
Query: 358 VPIHLHGCTHAASLSSASVAKQTQ-QDLAFS---SSAGCKACELLTLVP*HSLDSPDIMF 191
V + + C +S + K T+ D+ + S C L +VP SPD MF
Sbjct: 570 VLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMF 629
Query: 190 Y 188
Y
Sbjct: 630 Y 630
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 494 YEGTHGRKHDNVFRFALRAENLACDVAPLLLIDPPL 387
+EG ++ +R L A NL V LL DPP+
Sbjct: 269 HEGGQQHGAEDYYRDTLNAANLTYSVEDWLLWDPPV 304
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 548 SNKWTY-LV--GDLFHSIEHGYEGTHGRKHDNVFRFALRAENLACDVAPLLLIDPPL 387
S WT L+ G F+ E Y T ++ A A NLAC++ PL I L
Sbjct: 210 SKSWTADLIYDGKEFYIFEKPYNTTKSIHGESCSLTAAIASNLACNIPPLQAIHEAL 266
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 330 WVQPCKCIGTTKW-VHQSCLQRWVDEKQRGNITRK-VLCPQCKAEY 461
++ C I + KW +HQ L + V+++ R + K +CP C ++
Sbjct: 102 YIDFCSTIDSIKWRMHQ--LVKTVEDRMRNDFDSKGYVCPFCNKKF 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,536
Number of Sequences: 5004
Number of extensions: 66894
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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