Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C22
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   1.7  
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    27   6.8  
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    27   6.8  
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686...    27   6.8  
07_03_1455 - 26659480-26659758,26659907-26660149                       27   9.0  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    27   9.0  

>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +1

Query: 73  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 252
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 253 KTTEMKFKPGEEFEED 300
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 147 HRRGSDHPQSRQRCHPDRGAP 209
           HRRG      RQRC   RGAP
Sbjct: 87  HRRGPSLVPGRQRCGGARGAP 107


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
 Frame = +1

Query: 31  TDALK-TFLLNL*S*SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVEL 207
           T+ LK T  L+L     K+  +   +K   +EN  + M T     ++++A N +    E 
Sbjct: 147 TNGLKDTSSLSLEKEKGKLGKINASHKTIGAEN-KKPMLTKSNSSLSKQALNGLGDKKEA 205

Query: 208 RKDGDEYNLVTSSTFKTTEMKFKPG--EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPTV 381
            K   +     S+    T +   P   + F  D     KVK       + L  ++KA +V
Sbjct: 206 IKSKAKPAGTRSTPSSPTSVYSLPASFDRFSNDLKQRNKVKGAEKASSSRLSLLEKAASV 265

Query: 382 LKSLTSGNSA 411
           LK  T+G  +
Sbjct: 266 LKVTTAGRKS 275


>03_02_0254 +
           6862762-6863663,6863994-6864241,6864323-6864465,
           6864532-6864570,6865403-6865501
          Length = 476

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 201 HGRGDSVGGFAGDQTHADGLH 139
           HG G + G F G + H DG+H
Sbjct: 271 HGFGRTNGQFLGGRAHGDGVH 291


>07_03_1455 - 26659480-26659758,26659907-26660149
          Length = 173

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 196 TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 297
           TV LR    E  L+TSS    TE   K GEEF++
Sbjct: 122 TVSLRPP--ELPLLTSSRLNPTETPHKEGEEFKK 153


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 138 HEDHRRGSDHPQSRQRCHPDR 200
           H  HRRG  H Q +   HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,844,234
Number of Sequences: 37544
Number of extensions: 214128
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)