Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C21
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   3.7  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    24   4.8  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    24   4.8  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    24   6.4  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75   ILTVWLARPRGRVHRRIV*IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTL---MWQ 245
            +L+  +A+P  +         SY IPSS SR    +SY +S++ +  +  + +L   +  
Sbjct: 880  VLSSTIAKPTFKFSTSNSGSTSYSIPSSSSRNEGTTSY-SSNITVTSSTLKPSLTSSVST 938

Query: 246  QNSYLVDSGINSGAATQ 296
             +SY+  S  ++  +T+
Sbjct: 939  ASSYIASSASSNTLSTE 955


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   VLNRRDGGSDIVHXICKNYLKVVKILTVWLA 95
           + ++R GG       CK  +KV+++   W+A
Sbjct: 348 LFSKRLGGRIKEDIFCKKVVKVIEVWKTWIA 378


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 29  GYCAXNL*KLFKSRENINCLACTAKG 106
           G+C  NL KL K        ACT KG
Sbjct: 122 GFCETNLGKLTKREGQPLFTACTPKG 147


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 218 VWCHWHIRSNIAAVRHCATLR*WNLIT 138
           V C   +R+ +A+  + AT+R WNL T
Sbjct: 276 VMCLQLVRNILASGSYDATIRLWNLAT 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,665
Number of Sequences: 5004
Number of extensions: 25657
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)