Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_C21
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 28 1.8
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 27 4.2
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 27 4.2
03_05_0280 - 22671786-22672208 26 5.6
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376... 26 7.4
09_06_0359 + 22508900-22509439 26 7.4
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 25 9.7
06_03_1402 - 29906706-29907047,29919049-29919485,29919622-299199... 25 9.7
03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129 25 9.7
02_05_1163 + 34615591-34615678,34615866-34616202,34616419-346165... 25 9.7
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 25 9.7
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 71 ENINCLACTAKGTGASSHRLN-HELSNSIIAKSHNVAQQLCCF 196
++ +C C +H LN HE+ I+ + HN LC F
Sbjct: 322 DSCSCFTCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHYLCFF 364
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 53 KLFKSRENINCLACTAKGTGASSHRLNHE 139
KL K + C GTGAS HRL E
Sbjct: 339 KLDKLEQKTTCGQALVYGTGASKHRLRPE 367
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -1
Query: 244 CHINVCCSLFGAI----GTSEAT*LLCDIVRLCDDGI 146
CHIN CS +++T LCD++ L DG+
Sbjct: 98 CHINKLCSTHCLACLKESMAQSTESLCDMINLTSDGV 134
>03_05_0280 - 22671786-22672208
Length = 140
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 153 SSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQV 299
S +S M H D P ++ T + + S+LVD GI G +V
Sbjct: 41 SVESPRMPHPPCCLHDGPAVIDQRNTTRLALEPSFLVDHGIGEGQGHRV 89
>11_05_0097 -
19036044-19036358,19036502-19036585,19036772-19037644,
19038059-19038157
Length = 456
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 236 DVAAKLLFSGLWNQLWSCYPGXI 304
+ A + S W +LW CYP +
Sbjct: 47 EAARTSMVSRSWRRLWRCYPNLV 69
>09_06_0359 + 22508900-22509439
Length = 179
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 62 KSRENINCLACTAKGTGASSHRLNHE 139
K+ EN CL KG GAS L+++
Sbjct: 33 KTAENFRCLCTGEKGLGASGKPLHYK 58
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 82 LFGLHGQGDGCIVASSKS*VIKFHHRKVAQCRTAAMLLLMC 204
L LH G IVA + S ++ R V R++ + + MC
Sbjct: 288 LHALHSSCPGYIVAITASDIVNVFQRAVHTSRSSELQVAMC 328
>06_03_1402 -
29906706-29907047,29919049-29919485,29919622-29919901,
29921956-29922068,29922290-29922320
Length = 400
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 236 DVAAKLLFSGLWNQLWSCYP 295
D A L S W LW+C+P
Sbjct: 62 DAARASLVSRNWRMLWTCHP 81
>03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129
Length = 186
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 203 ANGTKQRAADIDVAAKLLFSGLWNQLWSC 289
A G RA D+ +L S WN LW+C
Sbjct: 2 AYGRDLRAVDV-CEFRLFLSMSWNALWTC 29
>02_05_1163 +
34615591-34615678,34615866-34616202,34616419-34616582,
34616706-34616871,34617255-34617357,34617453-34617578,
34617718-34617807,34618030-34618308
Length = 450
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 141 YQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQN 251
Y S+ T S +SDVP P+ E L W++N
Sbjct: 63 YNAWSTLLDTTSDEVMKSSDVPRPPHLENCRLKWERN 99
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -2
Query: 183 CC---ATLCDFAMMEFDNS*FRRCDDAPVPLAV 94
CC ATL +F +F S RCD P+A+
Sbjct: 142 CCNFDATLFEFGTGDFVGSCMSRCDIEKAPIAI 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,704
Number of Sequences: 37544
Number of extensions: 186908
Number of successful extensions: 446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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