Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C21
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical pr...    29   0.55 
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    26   5.1  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    26   6.8  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    26   6.8  
U41535-11|ABD63232.1|  249|Caenorhabditis elegans Lin-26 related...    25   8.9  
U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related...    25   8.9  
U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related ...    25   8.9  
U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related ...    25   8.9  
U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related ...    25   8.9  
U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional gl...    25   8.9  
AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    25   8.9  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    25   8.9  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    25   8.9  
AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protei...    25   8.9  
AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protei...    25   8.9  
AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacti...    25   8.9  
AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacti...    25   8.9  

>Z81464-1|CAE17676.1|  131|Caenorhabditis elegans Hypothetical
           protein B0462.4 protein.
          Length = 131

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 138 SYQIPSSQSRTMSHSSYV---ASDVPMAPNKEQQTLMWQQN 251
           +Y+ PS++S T +HS ++     DVP+ P    QT  + +N
Sbjct: 39  NYRRPSTESTTSNHSIHIPVGVDDVPVLPTSTMQTPHFTKN 79


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 148 FHHRKVAQCRTAAMLLLMCQW 210
           ++H+  + C TA +LLLMC +
Sbjct: 115 YYHKYRSHCPTATILLLMCAY 135


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 149 NLITHDLDDATMHP-SPWP 96
           N++ HD+D  T+HP SP P
Sbjct: 374 NVVKHDIDAPTLHPLSPAP 392


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 149 NLITHDLDDATMHP-SPWP 96
           N++ HD+D  T+HP SP P
Sbjct: 374 NVVKHDIDAPTLHPLSPAP 392


>U41535-11|ABD63232.1|  249|Caenorhabditis elegans Lin-26 related
           protein 1, isoform e protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 41  LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 88


>U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related
           protein 1, isoform c protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 101 LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 148


>U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related
           protein 1, isoform a protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 101 LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 148


>U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related
           protein 1, isoform d protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 101 LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 148


>U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related
           protein 1, isoform b protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 101 LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 148


>U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional
           glyoxylate cycle proteinprotein.
          Length = 1005

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 304 DGTWVAAPELIP 269
           DGTWVA P L+P
Sbjct: 838 DGTWVAHPGLVP 849


>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   VLNRRDGGSDIVHXICKNYLKVVK-ILTVWLARPRGRV 113
           ++N +DGG+ +     +++LK++  IL V L    GR+
Sbjct: 118 IVNAKDGGNVLRQEYAQDFLKILDWILNVKLLSSAGRI 155


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   VLNRRDGGSDIVHXICKNYLKVVK-ILTVWLARPRGRV 113
           ++N +DGG+ +     +++LK++  IL V L    GR+
Sbjct: 102 IVNAKDGGNVLRQEYAQDFLKILDWILNVKLLSSAGRI 139


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   VLNRRDGGSDIVHXICKNYLKVVK-ILTVWLARPRGRV 113
           ++N +DGG+ +     +++LK++  IL V L    GR+
Sbjct: 118 IVNAKDGGNVLRQEYAQDFLKILDWILNVKLLSSAGRI 155


>AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protein
           protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 101 LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 148


>AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protein
           protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 132 IMSYQIPSSQSRTMSHSSYVASDVPMAPNKEQQTLMWQQNSYLVDSGINSGAATQ 296
           +  +QIPS+ S T +   Y+ SD P   ++ QQ    Q N +  D+ +NS A  Q
Sbjct: 101 LQQHQIPSTSSYTNNSFIYIKSD-PQYKDEPQQ----QSNQF--DATVNSVAHGQ 148


>AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacting
           protein protein7, isoform b protein.
          Length = 863

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 304 DGTWVAAPELIP 269
           DGTWVA P L+P
Sbjct: 798 DGTWVAHPGLVP 809


>AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacting
           protein protein7, isoform a protein.
          Length = 968

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 304 DGTWVAAPELIP 269
           DGTWVA P L+P
Sbjct: 798 DGTWVAHPGLVP 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,889,971
Number of Sequences: 27780
Number of extensions: 151578
Number of successful extensions: 370
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)