Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C16
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    41   7e-04
AF038622-2|AAL06047.2|  177|Caenorhabditis elegans Hypothetical ...    28   6.7  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +3

Query: 255 PREIKDIKDFLIKARRKDAK 314
           P+EIK+IKDFL+KARRKDAK
Sbjct: 2   PKEIKEIKDFLVKARRKDAK 21


>AF038622-2|AAL06047.2|  177|Caenorhabditis elegans Hypothetical
           protein R07C12.2 protein.
          Length = 177

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 220 YSLFSNLCYYFSRVKSKISKTF*LRRGGKTPNVSIYNFNLTYS 348
           Y+  S+    FSR  S       +R GG T + ++YN NL YS
Sbjct: 102 YNASSSTNGSFSRNNSPSEGNSTIRIGGATLDPAVYNMNLEYS 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,056
Number of Sequences: 27780
Number of extensions: 196897
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)