Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C13
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1574 + 38337669-38338196                                         29   1.0  
04_04_1447 + 33675146-33675922                                         27   3.1  
04_04_0071 - 22513684-22513697,22514052-22514328,22514417-225146...    27   5.3  
08_02_0752 - 20795447-20795502,20795673-20795893,20795998-207960...    26   7.1  
03_05_0092 - 20714102-20717902                                         26   9.3  

>01_06_1574 + 38337669-38338196
          Length = 175

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -3

Query: 327 SVCHVSLYHXRNWRINSPGARSSRGANYGLISRCLCHXC 211
           S+C    YH R  R     +   +G  Y     CLC  C
Sbjct: 39  SLCPYKFYHIRCLRYEQIASSEQQGNEYWYCPSCLCRVC 77


>04_04_1447 + 33675146-33675922
          Length = 258

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 243 GLISRCLCHXCGSRRFCCFGSLCRRLSGI 157
           G ISR  C+ CG+  +   GS CRR   +
Sbjct: 82  GDISRAACYDCGTSVWRDAGSACRRAKDV 110


>04_04_0071 -
           22513684-22513697,22514052-22514328,22514417-22514659,
           22515119-22515157
          Length = 190

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 201 RFCCFGSLCRRLSG 160
           RFCCFG+ C   SG
Sbjct: 3   RFCCFGAGCSEFSG 16


>08_02_0752 -
           20795447-20795502,20795673-20795893,20795998-20796083,
           20796315-20796405,20796499-20796584,20796705-20796807,
           20796888-20796985,20797771-20797950
          Length = 306

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 92  TDSGGLCFRGCQCSQGTGSK*QIPLNRRHKLPKQQKRR 205
           ++S G  + G  CS G  S  ++PL  RH+ P +  RR
Sbjct: 12  SESSGHHWAGYSCSAGEASSPRLPL--RHRPPPRDFRR 47


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 342 AKMPESVCHVSLYHXRNWRINSPGARSSRG 253
           A +PESVC + L    + R +SP  R+  G
Sbjct: 683 ADLPESVCDLHLLQVLDVRCSSPYLRAPNG 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,150,220
Number of Sequences: 37544
Number of extensions: 141758
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)