Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C12
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   3.3  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.4  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = -3

Query: 272  SYNFKLI---VQHDFTHDFFQSLIKVLYQYS*VAHLIGNCYLKHSST*LFCMNTPYNTQL 102
            S+ FK+I   +QHD T    +   + L +   +   +G  +++     L   NTPY  +L
Sbjct: 890  SHEFKVIHCLLQHDPTK---RPSSQELLESEAIPPKVGEEFIQEGLRLLSNPNTPYYLKL 946

Query: 101  LKIICKQV--RHTSPSY 57
            LK++  QV  RH   +Y
Sbjct: 947  LKVLFGQVPDRHKDFTY 963


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 189 VGCTSNWKLLSKTQLYVIILY 127
           + CT++  LLSK+ LY + LY
Sbjct: 265 IACTTDTVLLSKSSLYDLALY 285


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 155 LDNNFQLDVQPTNIDIK 205
           L+NNF   ++P N+DIK
Sbjct: 431 LENNFACLLEPENVDIK 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,066
Number of Sequences: 5004
Number of extensions: 40141
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)