Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C07
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical pr...    36   0.016
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    27   7.3  
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p...    26   9.7  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini...    26   9.7  

>U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical
           protein B0495.6 protein.
          Length = 87

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 145 GERYNIHSQLEHLQSKYIGT 204
           GER+++ +QLEHLQSKY GT
Sbjct: 5   GERFHVLAQLEHLQSKYTGT 24


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 363 LKHSFHQIEFYARFRFIFYDRKVTQQIRMTHVAAARVAMLVHKPFIFCSV 214
           L+ +   +  +A     +Y  K+    +++ V   R  ++VH P IFC++
Sbjct: 97  LRDASSMVALFAIVHVFYYRYKILSHQKLSSVQIMRNFIIVHLPAIFCAI 146


>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 378 RWAAWLKHSFHQIEFYARFRFIFYD 304
           ++  W+  SF  I FY +F +I+YD
Sbjct: 124 KFIVWIFISFVAILFYEKFCYIYYD 148


>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical protein
            C04H5.6 protein.
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 187  SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIV 309
            SK   TGH  T K++   + H +SC  +   P  + YF +V
Sbjct: 917  SKLDNTGHYKTVKHKHTTHPHPNSCL-FEETPRWVVYFELV 956


>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
            protein C04H5.6 protein.
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 187  SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIV 309
            SK   TGH  T K++   + H +SC  +   P  + YF +V
Sbjct: 917  SKLDNTGHYKTVKHKHTTHPHPNSCL-FEETPRWVVYFELV 956


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 214 DTTKYEWLMNQHRDSCCSYMGH 279
           +   Y++  N H ++CC+Y  H
Sbjct: 180 NNNNYDYNYNYHHNNCCNYHNH 201


>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
            protein MOG-4 protein.
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 187  SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIV 309
            SK   TGH  T K++   + H +SC  +   P  + YF +V
Sbjct: 917  SKLDNTGHYKTVKHKHTTHPHPNSCL-FEETPRWVVYFELV 956


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,160,216
Number of Sequences: 27780
Number of extensions: 151149
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)