Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C03
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   118   5e-28
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   2.9  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   3.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   5.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   5.0  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    24   8.7  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    24   8.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    24   8.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  118 bits (283), Expect = 5e-28
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 373 KTTAXGLFKILEKYRPET 426
           K TA  +FK+L KYRPET
Sbjct: 84  KNTATQVFKLLNKYRPET 101


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 2  LLFCFGHFRRKFGIRFRSRIFSW 70
          L  C+G   R+ G+++ S I SW
Sbjct: 23 LFLCYGKSSRELGVKWNSDIRSW 45


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 291 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 380
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 KAVLQRRLKVPPPINQFTQTLDKTTAXGLFKILE 408
           KAVL   LK  P IN F + L       +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 343  EGALSDDAEVQPSGAGCGYTWAILQIWTSHELAECPDQWQSSLASSRREDSR 188
            +GAL   A V   G   G+ +++    T H L +     Q +L+SS+R  +R
Sbjct: 1538 KGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQQALSSSQRTRAR 1589


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -3

Query: 334 LSDDAEVQPSGAGCGYTWAILQIWTSHELAECPDQWQSSLASSRREDSRSSW 179
           + D+AE++      G +W+++   ++     C D W+  +     E +RS W
Sbjct: 261 IEDEAELKKLVEKHGTSWSLIGKLSNRLPMHCRDHWRDYIQPG--EINRSPW 310


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 379 TAXGLFKILEKYR 417
           TA GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 264 QICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 383
           Q+   A  YP+ +     SAS  S+P+     P T +  S
Sbjct: 308 QLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,063
Number of Sequences: 5004
Number of extensions: 29548
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)