Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_C03
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 120 6e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 120 6e-28
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 119 8e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 5e-22
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 29 1.9
U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical pr... 27 4.3
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 27 4.3
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 26 10.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 120 bits (288), Expect = 6e-28
Identities = 52/78 (66%), Positives = 64/78 (82%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 373 KTTAXGLFKILEKYRPET 426
+A FK+L+KYRPE+
Sbjct: 90 SQSARQAFKLLDKYRPES 107
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 120 bits (288), Expect = 6e-28
Identities = 52/78 (66%), Positives = 64/78 (82%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 373 KTTAXGLFKILEKYRPET 426
+A FK+L+KYRPE+
Sbjct: 90 SQSARQAFKLLDKYRPES 107
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 119 bits (287), Expect = 8e-28
Identities = 52/78 (66%), Positives = 64/78 (82%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 373 KTTAXGLFKILEKYRPET 426
+A FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 5e-22
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 IAFLFRPFSPKVWYTI*VTYLFVA 72
+ FLF PFS VW + +T L VA
Sbjct: 52 VVFLFHPFSTTVWLLLSLTVLVVA 75
>U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical
protein T01B6.4 protein.
Length = 138
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 280 AILQIWTSHELAECPDQWQSSLASSRREDSRSSWAQPF*PP 158
AI+ + S+ E P+QW+ S+ ED SW + PP
Sbjct: 12 AIIVVNASYRATESPEQWRQRFLKSQSED--PSWLRFPTPP 50
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = +3
Query: 270 CKMAQVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*XP 392
C P P P GC+ + +++ DQPIY T Q Y+ P
Sbjct: 35 CAPRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 282 QVYPHPAPE--GCTSASSESAPSDQPIYP 362
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 282 QVYPHPAPE--GCTSASSESAPSDQPIYP 362
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 282 QVYPHPAPE--GCTSASSESAPSDQPIYP 362
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 9 FVSAIFAESLVYDLGHVSFRGL 74
F+ ++++ +VYD+ HV F GL
Sbjct: 720 FIWSVYSPKVVYDMAHVIFFGL 741
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 244 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAXGLFKILEKYRP 420
+PT D+S +++ ++ + + Q R +P ++ FT +D + K+ E RP
Sbjct: 188 KPTIDISSLMQFDVFVILLDSLSYSQGRRALPRTLSYFTNHMDGVIFPYVNKVGENSRP 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,301,476
Number of Sequences: 27780
Number of extensions: 167891
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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