Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C02
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-2|AAF35960.2|  105|Caenorhabditis elegans Hypothetical ...    34   0.053
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    29   1.5  
Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC024136-2|AAF35960.2|  105|Caenorhabditis elegans Hypothetical
           protein F54A3.5 protein.
          Length = 105

 Score = 33.9 bits (74), Expect = 0.053
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = +2

Query: 140 NNTTDDYSAKIDMCLTDGIVKTXXXXXXXXXXXXXFLKRRRWPXXXXXXXXXXXXXXNCE 319
           + + D+   KID C  D ++K              F K R WP              NC 
Sbjct: 11  SRSEDEVGQKIDRCFADSLLKVTGGVAIGIVASVAFFKSRSWPIWFGSGVGLGTGWSNCR 70

Query: 320 HE 325
           H+
Sbjct: 71  HD 72


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 367 VLTYYILCSICLI*FMFTVCISDTDAYTH 281
           ++++ +LCS+CL+ F+F V  S      H
Sbjct: 67  IVSFLVLCSVCLLIFVFDVATSQESEAFH 95


>Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical
           protein T10G3.4 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 394 PSFIXCFLVVLTYYILCSICLI*FMFTVC-ISDTDAY 287
           P F   F+++++ Y +C+ICL+  + ++C + D ++Y
Sbjct: 45  PFFTLSFILLISSYAICNICLL--LRSICELYDEESY 79


>AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical
           protein R08F11.3 protein.
          Length = 494

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -2

Query: 264 HLLLFRKRTEARPPSKTPLPVF--TMPSV 184
           HLL +++R    PP  TPLP+F  T+P++
Sbjct: 18  HLLYWKRRN--LPPGPTPLPLFGNTLPTL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,516,210
Number of Sequences: 27780
Number of extensions: 183630
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)