Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B13
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    48   1e-06
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   0.96 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.9  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.1  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +2

Query: 170 KFTIDCTHPAEDSILXVGNFXKYLKEHVKVEGKTNNLSNHVVVAR 304
           K+ ID T    D I  V  F KYL + +KV+GKT NL + VVV+R
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSR 55



 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +3

Query: 282 AITLSSPGYKTKVAITADIPFSXXXXXXXXXXXXXXNNLRDWLRVVASAHDAYELRYF 455
           ++ +S  G  +K+A+ A I FS              ++LRDWLRVV++    YELRY+
Sbjct: 50  SVVVSREG-SSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 154 LDAFAADFATLHSFFASLLMQLGFFS 77
           +D +  DFAT H+ + + L  +GF S
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 170 KFTIDCTHPAEDSILXVGNFXKYLKEHVKVEGKTNNL 280
           K   DC +  + ++  + N  K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 329 GDSDFRLIPWRRQRDCLGYLFCPQL 255
           G SD  ++PW   R CLG    P L
Sbjct: 142 GMSDGSVVPWDVTRHCLGKFKVPNL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,185
Number of Sequences: 5004
Number of extensions: 25089
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)