Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B13
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       49   3e-06
07_03_1662 + 28447419-28447666,28448429-28448573                       46   1e-05

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 309 KTKVAITADIPFSXXXXXXXXXXXXXXNNLRDWLRVVASAHD--AYELRYF 455
           KTKV +T+D PFS              +N+RDWLRV+AS  D   YELRYF
Sbjct: 70  KTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 164 NLKFTIDCTHPAEDSILXVGNFXKYLKEHVKVE-GKTNNLSNHVVVAR 304
           ++ F IDC  P +D I+ + +  K+L+E +KV  GK  NL   V V+R
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSR 68


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 164 NLKFTIDCTHPAEDSILXVGNFXKYLKEHVKVE-GKTNNLSNHVVVAR 304
           ++ F IDC+ P ED I+ + +  K+L+E +KV  GK  NL + V V R
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTR 67



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 309 KTKVAITADIPFSXXXXXXXXXXXXXXNNLRDWLRVVASAHD--AYELRYF 455
           KTKV +T+D  FS              +N+RDWLRV+A+  D   YELRYF
Sbjct: 69  KTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,502
Number of Sequences: 37544
Number of extensions: 172738
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)