Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B06
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471    101   1e-22
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528    100   4e-22
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    98   1e-21
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    27   3.1  
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    27   5.5  
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    26   9.6  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score =  101 bits (243), Expect = 1e-22
 Identities = 46/69 (66%), Positives = 59/69 (85%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 231
           MP++I +IKDFL+ A RKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 232 PPGLQVKEV 258
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score =  100 bits (239), Expect = 4e-22
 Identities = 45/69 (65%), Positives = 58/69 (84%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 231
           MP++I +IKDFL+ A RKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 232 PPGLQVKEV 258
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 44/68 (64%), Positives = 57/68 (83%)
 Frame = +1

Query: 55  PREIKDIKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 234
           P++I +IKDFL+ A RKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 235 PGLQVKEV 258
           PGL V+EV
Sbjct: 92  PGLTVQEV 99


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  IKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 195
           ++  +I+AS+     V I   P  VK    C++F Y +V+T
Sbjct: 55  LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 5   LLDPLTVLVENYSSSTCRVKSKISKTF 85
           +LD L V++EN SS+T   +S I+ T+
Sbjct: 395 ILDALAVVLENISSTTPVARSTIAATY 421


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 52  MPREIKDIKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 213
           MP +   +   L+    +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,511,027
Number of Sequences: 37544
Number of extensions: 99159
Number of successful extensions: 267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)