Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_B06
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 122 7e-29
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 0.71
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 29 1.2
AF047655-10|AAC04396.1| 335|Caenorhabditis elegans Hypothetical... 28 2.2
AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical... 27 3.8
AC006722-5|AAK68410.3| 703|Caenorhabditis elegans Hypothetical ... 27 3.8
AC006645-10|AAF39849.1| 746|Caenorhabditis elegans Hypothetical... 27 3.8
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 26 8.7
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 26 8.7
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 26 8.7
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 26 8.7
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 26 8.7
AF040645-6|AAB94976.1| 301|Caenorhabditis elegans Hypothetical ... 26 8.7
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 26 8.7
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 122 bits (294), Expect = 7e-29
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = +1
Query: 52 MPREIKDIKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 231
MP+EIK+IKDFL+KA RKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 232 PPGLQVKEVK 261
PPG+QVKE+K
Sbjct: 61 PPGIQVKELK 70
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.5 bits (63), Expect = 0.71
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 101 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 217
G+ NR++ T+ S+S+ A S P+SS+T R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 43 VFNMPREIKDIKDFLIKASRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 186
+++MP IK ++FL+ +S K K +K+ K + K C + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274
>AF047655-10|AAC04396.1| 335|Caenorhabditis elegans Hypothetical
protein C17B7.2 protein.
Length = 335
Score = 27.9 bits (59), Expect = 2.2
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 49 NMPREIKD-IKDFLIKASRKDAKSVKIKKNPENVKFKVRCSRF---LYTLVITDKEKAEK 216
++ + +KD +KDFL K DAK+ KN N KF C++F L TL + A K
Sbjct: 170 DLKKALKDNLKDFLAKIDEVDAKN----KNDLN-KFDKSCTQFTPCLRTLQCGPEHPARK 224
Query: 217 LKQSL 231
K +L
Sbjct: 225 QKLNL 229
>AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical
protein R52.1 protein.
Length = 326
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 46 FNMPREIKDIKDFLIKASRKDAK-SVKIKKNPENVKFKVRC 165
F MP I+ ++FLI+ S K K +K+ K + K C
Sbjct: 225 FTMPLPIQKCEEFLIEKSEKSVKEKLKLVKKYQLKSLKTHC 265
>AC006722-5|AAK68410.3| 703|Caenorhabditis elegans Hypothetical
protein Y19D10A.10 protein.
Length = 703
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 5 LLDPLTVLVENYSSSTCRVKSKISKTF*LRRVGKTP 112
LL PL V ++ YSS CRV + + VG P
Sbjct: 123 LLFPLAVSIDFYSSFLCRVLQGMGSSIIFTSVGVVP 158
>AC006645-10|AAF39849.1| 746|Caenorhabditis elegans Hypothetical
protein F56A4.11 protein.
Length = 746
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 5 LLDPLTVLVENYSSSTCRVKSKISKTF*LRRVGKTP 112
LL PL V ++ YSS CRV + + VG P
Sbjct: 166 LLFPLAVSIDFYSSFLCRVLQGMGSSIIFTSVGVVP 201
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 46 FNMPREIKDIKDFLIKASRKDAKSVKIKKNPENVKF 153
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 178 YTLVITDKEKAEKLKQSLPPGLQVKEVK 261
+T V+ K EKL + P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 178 YTLVITDKEKAEKLKQSLPPGLQVKEVK 261
+T V+ K EKL + P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 46 FNMPREIKDIKDFLIKASRKDAKSVKIKKNPENVKF 153
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 46 FNMPREIKDIKDFLIKASRKDAKSVKIKKNPENVKF 153
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182
>AF040645-6|AAB94976.1| 301|Caenorhabditis elegans Hypothetical
protein F52C6.10 protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 VFNMPREIKDIKDFLIKASRKDAK-SVKIKKNPENVKFKVRC 165
+++MP I+ ++FLI +S K K +KI K + K C
Sbjct: 223 MYDMPFPIRKCEEFLIDSSEKSIKEKLKIAKQYKMENLKNSC 264
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 91 KASRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKL 219
KAS K A + K KK KFK C F Y + +T + A K+
Sbjct: 4140 KASMKQASNRKAKKVLVLYKFKRTC--FKYRVQVTITKSARKI 4180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,786,855
Number of Sequences: 27780
Number of extensions: 94455
Number of successful extensions: 351
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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