Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_B05
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 164 9e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 83 3e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 82 6e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 3e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 45 6e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 38 7e-04
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 7.0
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 9.5
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 25 9.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 164 bits (398), Expect = 9e-42
Identities = 73/83 (87%), Positives = 75/83 (90%)
Frame = +1
Query: 280 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVA 459
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDD EKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 460 PEEHPVLLTEAPLNPKANXEKMT 528
PEEHP LLTEAPLNPK+N EKMT
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMT 120
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 171 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 293
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 83.0 bits (196), Expect = 3e-17
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 295 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDXEKIWHHTFYN-ELRVAPEEH 471
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW D E+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 472 PVLLTEAPLNPKANXEKM 525
P+LLTE PL N EK+
Sbjct: 107 PLLLTEPPLANIRNKEKI 124
Score = 52.4 bits (120), Expect = 4e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 189 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 290
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 81.8 bits (193), Expect = 6e-17
Identities = 32/70 (45%), Positives = 52/70 (74%)
Frame = +1
Query: 316 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHPVLLTEAP 495
KD VGDEA++ R +L +KYP+E+GI+ ++++ ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 496 LNPKANXEKM 525
+NP AN EKM
Sbjct: 110 MNPVANREKM 119
Score = 48.0 bits (109), Expect = 9e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 177 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 281
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 69.3 bits (162), Expect = 3e-13
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 319 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHPVLLTEAP 495
D ++G++A K +L YPI HG + NWD E+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 496 LNPKANXE 519
LNP N E
Sbjct: 133 LNPPENRE 140
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 189 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 272
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 361 LTLKYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANXEK 522
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP N K
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 174 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 275
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 307 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDXEKIWHHTFYNELRVAPEEHPVLL 483
+ + + VG++ + G ++ + P E +++NWD E++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 484 TEAPLNPKANXEKMT 528
TE NP MT
Sbjct: 121 TEPLANPTYVRSTMT 135
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 189 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 284
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.3 bits (85), Expect = 7e-04
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 280 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDXEKIWHHTFYNELR 453
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 454 VAPEEHPVLLTEAPLNPKA 510
V P E+ +++TE NP++
Sbjct: 97 VNPTEYAMMITEPSWNPQS 115
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 174 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 275
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 216 TYRSHCLLPTRQLLRRTS*ISEI 148
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 358 ILTLKYPIEHGIVTN 402
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 21.4 bits (43), Expect(2) = 7.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 397 TNWDDXEKIWHHTFYNELRVAPEEHP 474
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 295 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 381
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 189 LVVDNGSGMCKAGFAG 236
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 22 LQHTQASIALSRXHRPAIGICFSRLAVTAG 111
+Q Q+S+ L R +PAI CFS +A+ G
Sbjct: 688 VQDLQSSV-LDRNVKPAILSCFSDIALAIG 716
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 372 FEGQDTSFALCLISYIRVLLSHTD 301
+EG+DT+ +Y+R++L TD
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTD 97
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +1
Query: 376 PIEHGIVTNWDDXEKIWHHTF 438
PI+ G V +W+ + W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,546
Number of Sequences: 5004
Number of extensions: 46406
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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