Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_B04
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 140 5e-34
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.95
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 2.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 2.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 2.2
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.8
U39742-4|AAK39196.1| 137|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 28 5.0
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.0
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 27 6.7
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 6.7
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 6.7
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 6.7
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 27 8.8
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 8.8
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 8.8
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 8.8
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 8.8
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 8.8
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 140 bits (340), Expect = 5e-34
Identities = 76/158 (48%), Positives = 95/158 (60%)
Frame = +2
Query: 44 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 223
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 224 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 403
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119
Query: 404 AYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRP 517
AYR +K + GPG + ++ G+GRG P
Sbjct: 120 AYRT----------EKVTEAGPGGAPV-YRAGFGRGAP 146
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 442
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRG 511
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRG 511
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRPA 520
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRPA 520
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRPA 520
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRPA 520
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 347 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGG-YGRGRPAS 523
R GP GRP P R + + PA G A H + D PG K G GRG P +
Sbjct: 165 RPGPDGRPGQPGRKGNNGRPGQ--PAPQGNAGHPGR-DGEPGQPGNPGKDGRKGRGHPGT 221
>U39742-4|AAK39196.1| 137|Caenorhabditis elegans Hypothetical
protein C25F6.6 protein.
Length = 137
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 466 TDISLFIMRCNTRGSRSTSVCRSVLSRAGWGIR 368
TDI LF +C T S VC S S AG R
Sbjct: 90 TDIKLFTQKCQTEPDFSLVVCCSSCSDAGISYR 122
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 365 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLE 487
+ D+ + S++D + ++TPA P KKA+ S D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 365 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFK 493
+ D+ + S++D + ++TPA P KKA+ S D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 350 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRP 517
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 350 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXDLEFKGGYGRGRP 517
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 475
GP G+P AP + D P P P AD PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 488 IQDQXSLDRHQPFYHEVQHQGQQE 417
+Q+Q + + Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 308 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 451
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 308 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 451
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 341 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 427
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 353 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSXD 481
G +P A ++ A+D SAY+RT H +K + PG D
Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 290 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 460
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 461 VGPGSXDLEFK 493
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 290 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 460
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 461 VGPGSXDLEFK 493
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 128 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 259
AP ++ +PNL + ++S GY+ + FYWY+ +E
Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 290 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 460
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 461 VGPGSXDLEFK 493
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 290 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 460
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 461 VGPGSXDLEFK 493
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,477
Number of Sequences: 27780
Number of extensions: 238486
Number of successful extensions: 875
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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