Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B03
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    33   0.033
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   6.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   6.6  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.8  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   8.8  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 23/87 (26%), Positives = 41/87 (47%)
 Frame = +1

Query: 205 HFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHF 384
           H + +V D   + KFY E+ GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 385 VVELTYNYGVTHXEQGNDFLGHHSTVK 465
           ++ELTYN+G T  ++G  ++  ++  K
Sbjct: 73  ILELTYNFG-TEKKEGPVYINGNTEPK 98


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 143 SELKS*AQSC*IAKWLAVVLFISYLKSQI 229
           SE+K  +    I+ W++++LF+S+L  ++
Sbjct: 505 SEIKQYSSLILISLWISLILFVSFLNRRL 533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 197 RPLTILLFNNFELMTLVQN*VI 132
           + L +L+FNN +L TL+QN ++
Sbjct: 131 KQLFLLIFNNGKLRTLLQNAIV 152


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 426 FVMRYTIVVGQFNNKMCIFRAISNHGF 346
           + M+ +I++G  +   C+F ++SN+ F
Sbjct: 523 YKMKLSIILGVIHMTFCLFLSLSNYRF 549


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 116 CVCTLCDYSKRXIIINL*RSRXKLFSNNVQRQQIKII 6
           C     DYS+  I++    +R + FS+ V+ QQ+ II
Sbjct: 94  CQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQLDII 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,352
Number of Sequences: 5004
Number of extensions: 45030
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)