Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_B03
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 77 1e-14
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 71 6e-13
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 64 1e-10
05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710 44 1e-04
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619... 32 0.32
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451... 30 1.3
08_02_0440 + 17192122-17192691,17193947-17194912 30 1.3
03_05_0050 + 20285475-20286092,20287481-20287840 29 3.0
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/85 (48%), Positives = 50/85 (58%)
Frame = +1
Query: 196 RALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPED 375
R LH V++V D T KFY E LGMK+LR + E R++ +GYGPED
Sbjct: 87 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------ERYTNAFLGYGPED 135
Query: 376 THFVVELTYNYGVTHXEQGNDFLGH 450
+HFVVELTYNYGV + G F GH
Sbjct: 136 SHFVVELTYNYGVESYDIGTAF-GH 159
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 71.3 bits (167), Expect = 6e-13
Identities = 40/91 (43%), Positives = 51/91 (56%)
Frame = +1
Query: 178 SKMVSGRALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMV 357
+K + R LH V++V D T KFY E LGMK+LR + E +++ +
Sbjct: 77 AKSDNRRLLHVVYRVGDIDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFL 125
Query: 358 GYGPEDTHFVVELTYNYGVTHXEQGNDFLGH 450
GYG ED HFVVELTYNYGV + G F GH
Sbjct: 126 GYGAEDNHFVVELTYNYGVDKYDIGAGF-GH 155
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +1
Query: 211 VFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVV 390
+ +V + FY + GM++LR + N Y +++ M+GYGPED + V+
Sbjct: 218 MLRVGNLDRAISFYEKACGMELLRKRD---------NPEY--KYTVAMMGYGPEDKNAVL 266
Query: 391 ELTYNYGVTHXEQGNDF 441
ELTYNYGVT ++GN +
Sbjct: 267 ELTYNYGVTEYDKGNAY 283
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = +1
Query: 196 RALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPED 375
R LH V++V D T K Y E GMK+LR + E +++ +G+GPED
Sbjct: 24 RLLHAVYRVGDLDRTIKCYTECFGMKLLRKRDVPE-----------EKYTNAFLGFGPED 72
Query: 376 THFVVELTYNYGVTHXEQGNDFLGH 450
T+F +ELTYNYGV + G F GH
Sbjct: 73 TNFALELTYNYGVDKYDIGAGF-GH 96
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +1
Query: 211 VFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVV 390
+ +V D + KFY + LGMK+LR ++ + +++ M+GY ED V+
Sbjct: 160 MLRVGDLDRSIKFYEKALGMKLLRKKDVPD-----------YKYTIAMLGYADEDKTTVI 208
Query: 391 ELTYNYGVTHXEQGNDF 441
ELTYNYGVT +GN +
Sbjct: 209 ELTYNYGVTEYTKGNAY 225
>05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710
Length = 92
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 355 VGYGPEDTHFVVELTYNYGVTHXEQGNDF 441
+GYGPED + V+ELTYNYGV ++GN +
Sbjct: 1 MGYGPEDKNAVLELTYNYGVKEYDKGNAY 29
>05_03_0361 -
12961101-12961201,12961683-12961772,12961910-12961980,
12962079-12962158,12962264-12962324,12963620-12963681,
12963826-12963833,12964273-12964609,12964946-12965089,
12965235-12965339
Length = 352
Score = 32.3 bits (70), Expect = 0.32
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +1
Query: 211 VFKVADRTLTAKFYREILGMKVLRHEEFSE--------GCEAACNGPYANRWSKTMVGYG 366
+F+V D ++ FY ++GM +L+ +F E G E + P + +T+ +G
Sbjct: 199 MFRVKDPKVSLDFYSRVMGMSLLKRLDFPEMKFSLYFLGYEDVESAP-TDPVKRTVWTFG 257
Query: 367 PEDTHFVVELTYNYGVTHXEQGNDFLGHHS 456
T +ELT+N+G E +F G+H+
Sbjct: 258 QRAT---LELTHNWGT---ENDPEFKGYHN 281
>12_01_0556 -
4514686-4514868,4515168-4515290,4515381-4515617,
4515747-4516358
Length = 384
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -1
Query: 426 FVMRYTIVVGQFNNKMCIFRAISNHGFAPSVCIRSIASCLTSFTKLFMAENLHSEDFPIK 247
+ + +VVG N+ M I +S+HG S+ IRS +T + M L S P+K
Sbjct: 169 YAAQRVLVVGCGNSGMEIAYDLSSHGANTSIVIRSPLHVMTK-ELIHMGMKLASWSLPVK 227
Query: 246 F 244
F
Sbjct: 228 F 228
>08_02_0440 + 17192122-17192691,17193947-17194912
Length = 511
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 381 MCIFRAISNHGFAPSVC-IRSIASCLTSFTKLFMAENLHSE 262
+C+FR++ G P+V S+ CL S +L AE+L E
Sbjct: 307 LCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAESLLDE 347
>03_05_0050 + 20285475-20286092,20287481-20287840
Length = 325
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 241 AKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGY 363
A F ++G +V+ E E + C+G Y NR +V Y
Sbjct: 151 ASFAAAVMGFRVVAFEPVLENLQRICDGVYLNRVQDQVVVY 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,646
Number of Sequences: 37544
Number of extensions: 267822
Number of successful extensions: 542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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