Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B02
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    58   8e-10
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    42   8e-05
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   5.4  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   9.5  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 58.4 bits (135), Expect = 8e-10
 Identities = 42/147 (28%), Positives = 64/147 (43%)
 Frame = +3

Query: 210 LHAEAMASLPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 389
           L +E ++ LP  V+RRI  LR L K + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 390 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVKGIPDFW 569
            G  EP ++E       D  E++   + ++     G               + KGIP+FW
Sbjct: 123 RGADEPTEEEIKKGEAADENEKKEPTSSESKKQEGGD--------------DTKGIPEFW 168

Query: 570 YNIXRNVSMLSEMMPEHDEPXLKCLQD 650
               +NV  LSEM+   DE  L  L D
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVD 195


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 50/170 (29%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
 Frame = +3

Query: 165 SGVTRNE--MIAAITNRLHAEA------MASLPPNVRRRIRALRTLXKEFVDIEAKFYSE 320
           SG+ RN   M++ I  RL +        + SL P V+ RI AL+ L K+   I+ +F  +
Sbjct: 56  SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115

Query: 321 VHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGX 500
           +                 RA I+ G  EP DDE       D EEE      QN       
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDEL------DHEEE----IFQN------- 158

Query: 501 XXXXXXXXXXXXXXNVKGIPDFWYNIXRNVSMLSEMMPEHDEPXLKCLQD 650
                         + KGIP+FW     NV ++ EM+   DE  L+ L D
Sbjct: 159 -----------NLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSD 197


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 156 CLKSGVTRNEMIAAITNRLHAEAMA 230
           C  +G+ +NE + ++ +  HAE +A
Sbjct: 70  CTPAGIIKNEQLGSVLHDCHAEILA 94


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 218 CMKAISDGRYHFITGHATFQ 159
           C+K +    + +ITGHA F+
Sbjct: 255 CLKFVRPSLFGYITGHAVFE 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,685
Number of Sequences: 5004
Number of extensions: 40264
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)