Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B02
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39553-1|AAB07898.1|  370|Drosophila melanogaster nucleosome ass...    56   3e-08
BT001479-1|AAN71234.1|  370|Drosophila melanogaster LD21576p pro...    56   3e-08
AE013599-3725|AAF47097.1|  370|Drosophila melanogaster CG5330-PA...    56   3e-08
AY058402-1|AAL13631.1|  375|Drosophila melanogaster GH17085p pro...    52   7e-07
AL109630-5|CAB65874.1|  375|Drosophila melanogaster EG:BACR7A4.1...    52   7e-07
AE014298-125|AAF45565.2|  375|Drosophila melanogaster CG3708-PA ...    52   7e-07

>U39553-1|AAB07898.1|  370|Drosophila melanogaster nucleosome
           assembly protein NAP-1 protein.
          Length = 370

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
 Frame = +3

Query: 195 AITNRLHAEAMAS-LPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXX 371
           ++  R + + M   LP  V+ RI  L+ L  + ++IEA+F+ +V+               
Sbjct: 35  SVMRRQYLQQMVKMLPAPVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFD 94

Query: 372 XRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVK 551
            R  I+ G  +P +++    W++     +      N A  E                + K
Sbjct: 95  KRREIIEGKVDPAEEK--PQWKEPESSTD------NEADAE--HFREALSSLKSIPKDAK 144

Query: 552 GIPDFWYNIXRNVSMLSEMMPEHDEPXLKCLQD 650
           GIP FW  + RN +++SEM+  HDEP ++ L D
Sbjct: 145 GIPGFWLTVFRNTAIMSEMVQPHDEPAIRKLID 177


>BT001479-1|AAN71234.1|  370|Drosophila melanogaster LD21576p
           protein.
          Length = 370

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
 Frame = +3

Query: 195 AITNRLHAEAMAS-LPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXX 371
           ++  R + + M   LP  V+ RI  L+ L  + ++IEA+F+ +V+               
Sbjct: 35  SVMRRQYLQQMVKMLPAPVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFD 94

Query: 372 XRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVK 551
            R  I+ G  +P +++    W++     +      N A  E                + K
Sbjct: 95  KRREIIEGKVDPAEEK--PQWKEPESSTD------NEADAE--HFREALSSLKSIPKDAK 144

Query: 552 GIPDFWYNIXRNVSMLSEMMPEHDEPXLKCLQD 650
           GIP FW  + RN +++SEM+  HDEP ++ L D
Sbjct: 145 GIPGFWLTVFRNTAIMSEMVQPHDEPAIRKLID 177


>AE013599-3725|AAF47097.1|  370|Drosophila melanogaster CG5330-PA
           protein.
          Length = 370

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
 Frame = +3

Query: 195 AITNRLHAEAMAS-LPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXX 371
           ++  R + + M   LP  V+ RI  L+ L  + ++IEA+F+ +V+               
Sbjct: 35  SVMRRQYLQQMVKMLPAPVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFD 94

Query: 372 XRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVK 551
            R  I+ G  +P +++    W++     +      N A  E                + K
Sbjct: 95  KRREIIEGKVDPAEEK--PQWKEPESSTD------NEADAE--HFREALSSLKSIPKDAK 144

Query: 552 GIPDFWYNIXRNVSMLSEMMPEHDEPXLKCLQD 650
           GIP FW  + RN +++SEM+  HDEP ++ L D
Sbjct: 145 GIPGFWLTVFRNTAIMSEMVQPHDEPAIRKLID 177


>AY058402-1|AAL13631.1|  375|Drosophila melanogaster GH17085p
           protein.
          Length = 375

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 37/142 (26%), Positives = 59/142 (41%)
 Frame = +3

Query: 225 MASLPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 404
           +  L   V+ RIRALR    + V I  +F+ EV+                R  I+ G+ E
Sbjct: 75  IGQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRFYGQSCALFDARRDILEGSVE 134

Query: 405 PNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVKGIPDFWYNIXR 584
           P   +    W +D ++        N  + +                   G+P FW  + +
Sbjct: 135 P-PIQTEKTWPEDPQDALYLDFGNNEELRQ------LRQKLAPVSPTTLGVPRFWLTVFQ 187

Query: 585 NVSMLSEMMPEHDEPXLKCLQD 650
           NV +LSE++ +HDEP L+ L D
Sbjct: 188 NVPLLSELVQDHDEPLLESLMD 209


>AL109630-5|CAB65874.1|  375|Drosophila melanogaster EG:BACR7A4.18
           protein.
          Length = 375

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 37/142 (26%), Positives = 59/142 (41%)
 Frame = +3

Query: 225 MASLPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 404
           +  L   V+ RIRALR    + V I  +F+ EV+                R  I+ G+ E
Sbjct: 75  IGQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRFYGQSCALFDARRDILEGSVE 134

Query: 405 PNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVKGIPDFWYNIXR 584
           P   +    W +D ++        N  + +                   G+P FW  + +
Sbjct: 135 P-PIQTEKTWPEDPQDALYLDFGNNEELRQ------LRQKLAPVSPTTLGVPRFWLTVFQ 187

Query: 585 NVSMLSEMMPEHDEPXLKCLQD 650
           NV +LSE++ +HDEP L+ L D
Sbjct: 188 NVPLLSELVQDHDEPLLESLMD 209


>AE014298-125|AAF45565.2|  375|Drosophila melanogaster CG3708-PA
           protein.
          Length = 375

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 37/142 (26%), Positives = 59/142 (41%)
 Frame = +3

Query: 225 MASLPPNVRRRIRALRTLXKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 404
           +  L   V+ RIRALR    + V I  +F+ EV+                R  I+ G+ E
Sbjct: 75  IGQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRFYGQSCALFDARRDILEGSVE 134

Query: 405 PNDDECLNPWRDDTEEEELARAVQNAAITEGXXXXXXXXXXXXXXXNVKGIPDFWYNIXR 584
           P   +    W +D ++        N  + +                   G+P FW  + +
Sbjct: 135 P-PIQTEKTWPEDPQDALYLDFGNNEELRQ------LRQKLAPVSPTTLGVPRFWLTVFQ 187

Query: 585 NVSMLSEMMPEHDEPXLKCLQD 650
           NV +LSE++ +HDEP L+ L D
Sbjct: 188 NVPLLSELVQDHDEPLLESLMD 209


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,826,937
Number of Sequences: 53049
Number of extensions: 466782
Number of successful extensions: 1185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)