Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_A24
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.25
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 31 0.33
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 0.44
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 0.58
02_04_0382 - 22501041-22501279,22501717-22501810 29 1.3
08_02_1289 - 25923916-25924586,25925148-25926630 27 4.1
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 4.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 5.4
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 5.4
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 7.1
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 27 7.1
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 26 9.4
01_06_0832 + 32291454-32291537,32291584-32291661,32292081-322928... 26 9.4
01_06_0390 - 28938485-28938751,28939924-28941282 26 9.4
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 112 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 261
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -1
Query: 180 AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRXK 16
A I +++G ++D ++F+ +S QS+DEN + H + +YH K
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 0.44
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +1
Query: 112 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 270
Y P + P V PP Y P +G P N + Y + P GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.3 bits (65), Expect = 0.58
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 100 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 255
QG Y+P R PP+ P Y P G Y +PQG+PY P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = +1
Query: 130 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKP 246
+PY P P P G Y P G Y P+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.1 bits (62), Expect = 1.3
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +1
Query: 55 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDR 219
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY D
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 220 PQGRPYFKPTPFPGARGG 273
P Y+ P P P GG
Sbjct: 75 PPSPDYYDPPPSPYYGGG 92
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 384 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 235
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 198 RCILRGPSPR-PTLLQAYPFPWCSRW 272
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 22 PVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 189
PV + + FMI+ ++L + N G P+D+ Y+ + P DY Y+P
Sbjct: 474 PVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDLFKLYDP 528
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 103 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPT-PFP 258
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 171 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 290
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 309 YFVINFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRA 130
YF I F+ + + PT + + + + L V+C+ ++ V +R +++G DV+A
Sbjct: 80 YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYG--EDVQA 136
Query: 129 VV 124
V
Sbjct: 137 QV 138
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 145 NPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPGARG 270
NP + NG + +NG YY P Y P PFP G
Sbjct: 357 NPANKQLRSDNGSQ-WNNGMYYAASPFYSGYGYPAPFPADPG 397
>01_06_0832 +
32291454-32291537,32291584-32291661,32292081-32292804,
32294259-32294446,32294623-32294682,32295516-32295959
Length = 525
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 145 NPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYF 240
+P +D NG G Y RPQ RPYF
Sbjct: 25 HPAEDLLVVVNGKRAGTTGMYATTRPQTRPYF 56
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 183 RTYRQRCILRGPSPRPTLLQAYPFPW 260
+ + RC R PS RPT Q P+
Sbjct: 234 KNFLSRCFTRNPSDRPTAAQLLEHPF 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,292,030
Number of Sequences: 37544
Number of extensions: 236975
Number of successful extensions: 623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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