Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_A21
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 1.3
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 26 2.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.2
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 2.9
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 25 3.9
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 3.9
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 5.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.1
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 5.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.7
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ... 24 8.9
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 246 LVLLSWKWFSNSSFITSFLIVLFTL 172
+++ ++WF+N SFIT ++ + F L
Sbjct: 52 VIVKFYRWFNNLSFITRWITIWFPL 76
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 119 MARNIKDNNNIDPATLLSNVKSTIKKDVIKELLEN-HFQESKTKI 250
++R N + + + T+ ++V KEL+EN HF E T I
Sbjct: 26 LSREYHKNGPYNHVVIRPLINDTLLRNVRKELMENIHFTEKVTDI 70
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 258 CGAILVLLSWKWFSNSS--FITSFLIVLFTLDNKV 160
C A+LV++S W + + F+TSFL+ T+ K+
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKI 468
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 NIDPATLLSNVKSTIKKDVIKELLE-NHFQESKTKIAPHALML 271
N D L N KS + + LL NHF ++ +K +PH +L
Sbjct: 117 NKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALL 159
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -2
Query: 270 NIRACGAILVLLSWKWFSNSSFITSFLIVLFTLDN 166
++R C + L + WF ++ SF++ +F N
Sbjct: 120 SMRRCQELKALCFFLWFMFGLYVASFIVQIFIAKN 154
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 205 KGTIRKPLPRK*NQDCPTC 261
K TI++P+P K N+D +C
Sbjct: 698 KSTIQRPIPIKNNEDSDSC 716
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 282 WPNVWSPRHACVQSNKHRERVLT 350
WP SPRHA + +R+LT
Sbjct: 352 WPFWLSPRHAVILPVNQTDRILT 374
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 137 DNNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIA 253
DNN++ P T L+ + KD+++ + + F +T+ +
Sbjct: 619 DNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQRTQFS 657
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 179 KSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVT 301
K T+ + + ELLE Q +K P + +L D LVT
Sbjct: 54 KLTVGLNSVNELLERCCQNAKDVTQPAVVFILHDQDSMLVT 94
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 128 NIKDNNNIDPATLLSNVKSTIKKDVIKEL 214
N D+N + LSN++S I D++ L
Sbjct: 1020 NTVDDNKVSSVEALSNIQSAIVADLLTSL 1048
>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
Taf13|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 251 APHALMLLADVAKCLVTETCLRAVKQAQREGXNKVD 358
AP ++ +L ++ + E CL A + A KVD
Sbjct: 36 APDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVD 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,058
Number of Sequences: 5004
Number of extensions: 29160
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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