Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A17
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    29   0.54 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    28   1.3  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   5.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    22   6.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   6.7  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 25  SNKWCAISNLCFFSFCVFIITRILIFTKSNV*ASNYNNIWKLLKSIASFNNIAHQ 189
           S  W  +S LC F+ C+  I RI  F  + V     +    L+ S  S N  +HQ
Sbjct: 485 STYWVTLSYLCTFTCCIMTIIRINYFVDNVVTTQTTHEEDALIGS--SINTSSHQ 537


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 293 DDSASSGYVTNETIYGTHEDS--HVVMSEKVQSLAGSIYQEFERMIARY 433
           D+   SGY TNET Y   ++S  H  +S K++++  SIYQ    M   Y
Sbjct: 39  DEEKGSGYNTNET-YSKMDNSLQHRGVS-KIEAVRDSIYQNKRGMYLAY 85


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 404 QEFERMIAR--YDEDVVKTXMPLLVNVLECLDSAYQTNQEHEVELELXREDNEQL 562
           Q  E ++AR   DED+ ++    L+N L  L   +  +++ ++E  L  +D+ Q+
Sbjct: 136 QLLEYILARGKLDEDLARSFAMQLINALVYLHKNFIVHRDLKIENVLLTQDSRQV 190


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 466 KWHXCFYYILIVSRYHTFELLVDTSSKRLYLL 371
           K H      LI +  H F +L+ T   R Y+L
Sbjct: 459 KSHAVLLTFLISALVHEFVMLLATGKFRCYIL 490



 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 283 FRCYLLTF 260
           FRCY+LTF
Sbjct: 485 FRCYILTF 492


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 302 HCRRNSFSMLFINFWFKEITSAPTEAV 222
           H ++N+F M FIN+   + T+ P E +
Sbjct: 622 HMKQNTFDMEFINY-LSDFTNNPREVI 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,487
Number of Sequences: 5004
Number of extensions: 42887
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)