Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A17
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.064
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 428 RYDEDVVKTXMPLLVNVLECLDSAYQ 505
           +Y+E+ + T MPLL+NV++ L   ++
Sbjct: 90  KYEENTILTTMPLLINVVKYLGGKHK 115


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 503 DRLNPSTLIHSLEVA 459
           DRLNP+  I++L VA
Sbjct: 118 DRLNPNLFIYALSVA 132


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 SFNNIAHQIKIMFSRKIH*TASVGAD 243
           S NN+AH +K+++  K H     G+D
Sbjct: 29  SANNLAHSMKVIYEWK-HIDFDFGSD 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,767
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)