Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_A16
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 65 7e-12
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 33 0.027
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 2.3
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz... 27 3.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.1
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 5.4
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 9.5
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 9.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 65.3 bits (152), Expect = 7e-12
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +3
Query: 447 SSPWSEHKAPDGRTYXYNSVTKQSLWGKPDXXKTSAXKLLSACVWKEYXTNXGRLYYHNI 626
+S W E K D R Y YNSVT++S+W KP+ K LS WKEY T G+ Y++N+
Sbjct: 33 ASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYNV 92
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 456 WSEHKAPDGRTYXYNSVTKQSLWGKPDXXKTS 551
W E+ DG+ Y YN T++S+W PD K +
Sbjct: 77 WKEYATADGKKYWYNVNTRESVWDIPDEYKAA 108
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 33.5 bits (73), Expect = 0.027
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 456 WSEHKAPDGRTYXYNSVTKQSLWGKP 533
W+EHKAP G Y +N+ K+S + +P
Sbjct: 9 WTEHKAPSGIPYYWNAELKKSTYQRP 34
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 447 SSPWSEHKAPDGRTYXYNSVT-KQSLWGKPDXXKTS 551
S WS +PDG+T + SV + ++W P K S
Sbjct: 104 SECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKIS 139
>SPAC824.06 |tim14||TIM23 translocase complex subunit
Tim14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 423 MLLHRPNQS-SPWSEHKAPDGRTYXY--NSVTKQSLWGKPDXXKTSAXKLLSACVWKEY 590
ML + P++ SP+ K + ++ S+ K S W P + S +L A W EY
Sbjct: 76 MLANHPDRGGSPYVASKVNEAKSLLDADRSIRKFSSWALPVSKQRSMPSVLEAVKWLEY 134
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 216 ASSFTASNAKRYASTNAARCGNATSAWVTSKYGYITTAH-GLSSHVAASIFNTT 374
ASS T S++ +STN+ TS+ +S ++ SS +A+S N+T
Sbjct: 150 ASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 165 SHGATQCGDQFSGSLKRASSFTASNAKRYASTNAARCGNATSAWVTSKYGYITTA--HGL 338
++ T S + SS ASN+ +S ++ + TSA TS T A
Sbjct: 164 TNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSAT 223
Query: 339 SSHVAASIFNTT 374
SS +A+S N+T
Sbjct: 224 SSSLASSSLNST 235
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 222 SFTASNAKRYASTNAARCGNATSAWVTSKYGYITTAHGLSSHVAASIFNT 371
++ ASN + Y S+N S + +K+G T A G + +++ NT
Sbjct: 158 TYLASNVQIYNSSNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANNT 207
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +3
Query: 456 WSEHKAPDGRTYXYNSVTKQSLWGKP 533
W + P+GR Y + T+ + W P
Sbjct: 294 WEQRYTPEGRPYFVDHNTRTTTWVDP 319
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 222 SFTASNAKRYASTNAARCGNATSAWVTSKYGYITTAHGLSSHVAASIFNT 371
++ ASN + + S+N A SA+ T+K+G A G + NT
Sbjct: 158 TYLASNVQIFNSSNELEQFAAESAYFTTKHGVRVLAVGFLYDFTGNANNT 207
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/54 (24%), Positives = 33/54 (61%)
Frame = +3
Query: 198 SGSLKRASSFTASNAKRYASTNAARCGNATSAWVTSKYGYITTAHGLSSHVAAS 359
S S S+ ++S++ +S++++ +++S+ +S+ TT+H +SH ++S
Sbjct: 135 SSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSS 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,841
Number of Sequences: 5004
Number of extensions: 44598
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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