Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_A16
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 63 2e-10
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 34 0.085
06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625... 28 5.6
07_03_0760 + 21306131-21307034,21307752-21307889,21308417-213085... 28 7.4
05_01_0545 - 4756266-4757510 28 7.4
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 27 9.8
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 27 9.8
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 447 SSPWSEHKAPDGRTYXYNSVTKQSLWGKPDXXKTSAXKLLSACVWKEYXTNXGRLYYHN 623
SS W EH + DG+ Y YN T+QS W KP T + ++ WKE+ T GR YY+N
Sbjct: 108 SSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYN 166
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +3
Query: 429 LHRPNQSSPWSEHKAPDGRTYXYNSVTKQSLWGKPDXXK 545
L R + S+ W E +GR Y YN VTKQS W PD K
Sbjct: 143 LERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELK 181
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 34.3 bits (75), Expect = 0.085
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 456 WSEHKAPDGRTYXYNSVTKQS 518
W+EH +P+G Y YNS+T++S
Sbjct: 620 WTEHTSPEGFKYYYNSITRES 640
>06_03_1485 +
30462009-30462098,30462212-30462340,30462416-30462520,
30462626-30462706,30462885-30463000,30463083-30463184,
30463298-30463417,30463678-30463748,30463805-30463899,
30464001-30464075,30464130-30464219,30464687-30464794
Length = 393
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +3
Query: 381 IPWHXNRN*MLLHQMLLHRPNQSSPWSEHKAPDGRTYXYNSVTKQSLWGKPDXXKTSAXK 560
I W RN +L P + P K P G + + + LWG P +
Sbjct: 56 ILWSPFRNTTILSNGTSENPALTKPKGAEKLPPGLVVTESDLHMRRLWGSPREDVATGKY 115
Query: 561 LLSACV 578
LL+ V
Sbjct: 116 LLALAV 121
>07_03_0760 +
21306131-21307034,21307752-21307889,21308417-21308547,
21311530-21311740,21311870-21312107,21312186-21312336,
21312452-21312814
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +2
Query: 254 LHQCRPLWQ---CHQCLGYLQIWLHYH---RPWAFLPCCRLHFQYHRQDSLAXKPELNAP 415
L QC P C CLG + W+ + +P + R +F++ + +P L P
Sbjct: 219 LAQCTPDLSEADCRSCLGRIIRWVPQYFAGKPGGRVFGVRCNFRFESYSFFSGRPLLQLP 278
Query: 416 APDVAPS 436
P AP+
Sbjct: 279 GPPPAPA 285
>05_01_0545 - 4756266-4757510
Length = 414
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 268 AALVEAYRLALEAVKEEARLRDPENWSPHWVAP 170
A L +AY +AL+ K+ A DP+N + WV P
Sbjct: 44 ARLRDAY-VALQTWKQTAIFSDPKNLTADWVGP 75
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 522 TSFVWLQNYSXMFFHQGPYVQTMDYFDLADGATSGAGAFNSG 397
TS +W+Q M P +Q YF+L+ ATSGA N G
Sbjct: 715 TSDIWIQTPREM-----PTLQCPPYFNLSGQATSGAFVPNPG 751
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 262 LVEAYRLALEAVKEEARLRDPENWSP 185
L +Y + + EE RLRDPE + P
Sbjct: 865 LCSSYENGITRIPEETRLRDPEAYHP 890
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,013
Number of Sequences: 37544
Number of extensions: 302265
Number of successful extensions: 800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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